HoloFood Data Portal

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MGYG000319912

Details for MGYG000319912, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ruminococcus_G Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Ruminococcus_G
Cluster representative

MGYG000309299

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309299 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319912’s cluster representative genome MGYG000309299 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309299 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319912 Copy API Endpoint
Samples containing this genome

MGYG000319912’s cluster representative (MGYG000309299) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309299’s sequence. Because MGYG000319912 has been clustered with MGYG000309299 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319912.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309299

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025252 Prebiotic
0.95 SAMEA10455483 Prebiotic
0.85 SAMEA7571782 Prebiotic
0.77 SAMEA10455474 Probiotic
0.77 SAMEA7697583 Probiotic
0.77 SAMEA10104989 Prebiotic
0.75 SAMEA9449839 Control
0.70 SAMEA7025248 Probiotic
0.70 SAMEA10158026 Control
0.66 SAMEA14099424 Prebiotic