HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905254: a HoloFood chicken host

Data available for SAMEA112905254


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 10 derived samples
API endpoint
/api/animals/SAMEA112905254 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905254, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.61 g
Average Daily Feed intake: Day 00 - 35 98.16 g
Average Daily Feed intake: Day 07 - 21 80.17 g
Average Daily Feed intake: Day 21 - 35 158.43 g
Average Daily Gain: Day 00 - 07 18.38 g
Average Daily Gain: Day 00 - 35 64.11 g
Average Daily Gain: Day 07 - 21 57.18 g
Average Daily Gain: Day 21 - 35 93.9 g
Average European Performance Efficiency Factor: Day 00 - 07 164.01 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.412 None
Average Feed to Conversion Ratio: Day 07 - 21 1.402 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.06 g
Average body weight at day 07 173.75 g
Average body weight at day 21 974.24 g
Average body weight at day 35 2288.9 g
European Performance Efficiency Factor: Day 00 - 35 408.24 None
European Performance Efficiency Factor: Day 07 - 21 397.62 None
European Performance Efficiency Factor: Day 21 - 35 556.59 None
FCR (not corrected): Day 00 - 07 1.121 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.536 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.687 None
Feed to Conversion Ratio: Day 00 - 07 1.121 g/g
Feed to Conversion Ratio: Day 00 - 35 1.531 g/g
Feed to Conversion Ratio: Day 21 - 35 1.687 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=92.59 P1=7.41 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 8.5 pH
Litter at Day 21 6.65 pH
Litter at Day 35 8.22 pH
Mean Abdominal fat Yield 1.39 %
Mean Abdominal fat weight 34.25 g
Mean Breast Yield 20.7 %
Mean Breast weight 498.65 g
Mean CRP at Day 07 2.3864 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1856 g
Mean Carcass Yield 77.07 %
Mean HPT at Day 07 1.533 ng/ml
Mean HPT at Day 21 0.77839 ng/ml
Mean HPT at Day 35 1.4371 ng/ml
Mean LPS at Day 07 6.8627 ng/L
Mean LPS at Day 21 5.5839 ng/L
Mean LPS at Day 35 5.7268 ng/L
Mean Legs Yield 19.97 %
Mean Legs weight 480.37 g
Mean TBARS 0.1067 mg MDA/kg
Mean carcass body weight 2409.2 g
Mean feather cortisol at Day 07 9.455 pg/mg
Mean feather cortisol at Day 21 30.837 pg/mg
Mean feather cortisol at Day 35 10.92 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB03 None

Sample metadata

Marker Measurement Units
Animal code CB03.02 None
Breed Cobb None
C-Reactive protein 3.66 pg/ml
Chicken body weight 180 g
Feather cortisol 12.45 pg/mg
Haptoglobin 61.15 ng/ml
Lipopolysaccharide 43.13 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None