HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905105: a HoloFood chicken host

Data available for SAMEA112905105


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
View 7 derived samples
API endpoint
/api/animals/SAMEA112905105 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905105, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.74 g
Average Daily Feed intake: Day 00 - 35 91.09 g
Average Daily Feed intake: Day 07 - 21 62.58 g
Average Daily Feed intake: Day 21 - 35 160.49 g
Average Daily Gain: Day 00 - 07 18.33 g
Average Daily Gain: Day 00 - 35 58.22 g
Average Daily Gain: Day 07 - 21 51.05 g
Average Daily Gain: Day 21 - 35 85.35 g
Average European Performance Efficiency Factor: Day 00 - 07 170.16 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.226 None
Average Feed to Conversion Ratio: Day 07 - 21 1.226 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.73 g
Average body weight at day 07 171.03 g
Average body weight at day 21 885.71 g
Average body weight at day 35 2080.6 g
European Performance Efficiency Factor: Day 00 - 35 372.18 None
European Performance Efficiency Factor: Day 07 - 21 416.45 None
European Performance Efficiency Factor: Day 21 - 35 453.87 None
FCR (not corrected): Day 00 - 07 1.077 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.564 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.88 None
Feed to Conversion Ratio: Day 00 - 07 1.077 g/g
Feed to Conversion Ratio: Day 00 - 35 1.564 g/g
Feed to Conversion Ratio: Day 21 - 35 1.88 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=83.33 P1=16.67 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=54.17 P1=29.17 P2=16.67 P3=0.00 P4=0.00 %
Litter at Day 07 6.08 pH
Litter at Day 21 7.54 pH
Litter at Day 35 6.89 pH
Mean Abdominal fat Yield 1.58 %
Mean Abdominal fat weight 36.6 g
Mean Breast Yield 21.24 %
Mean Breast weight 498.1 g
Mean CRP at Day 07 1.8972 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1812.5 g
Mean Carcass Yield 77.38 %
Mean HPT at Day 07 0.83619 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.63706 ng/ml
Mean LPS at Day 07 3.0898 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.8026 ng/L
Mean Legs Yield 19.56 %
Mean Legs weight 458.4 g
Mean TBARS 0.0633 mg MDA/kg
Mean carcass body weight 2343 g
Mean feather cortisol at Day 07 9.0433 pg/mg
Mean feather cortisol at Day 21 7.2683 pg/mg
Mean feather cortisol at Day 35 8.375 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA03 None

Sample metadata

Marker Measurement Units
Animal code CA03.01 None
Breed Cobb None
C-Reactive protein 25.84 pg/ml
Chicken body weight 166.8 g
Feather cortisol 9.35 pg/mg
Haptoglobin 15.47 ng/ml
Lipopolysaccharide 8.66 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None