HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905373: a HoloFood chicken host

Data available for SAMEA112905373


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905373 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905373, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.43 g
Average Daily Feed intake: Day 00 - 35 95.83 g
Average Daily Feed intake: Day 07 - 21 66.15 g
Average Daily Feed intake: Day 21 - 35 171.1 g
Average Daily Gain: Day 00 - 07 18.26 g
Average Daily Gain: Day 00 - 35 59.9 g
Average Daily Gain: Day 07 - 21 52.35 g
Average Daily Gain: Day 21 - 35 88.27 g
Average European Performance Efficiency Factor: Day 00 - 07 171.49 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.264 None
Average Feed to Conversion Ratio: Day 07 - 21 1.264 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.39 g
Average body weight at day 07 171.18 g
Average body weight at day 21 904.09 g
Average body weight at day 35 2139.8 g
European Performance Efficiency Factor: Day 00 - 35 355.68 None
European Performance Efficiency Factor: Day 07 - 21 414.3 None
European Performance Efficiency Factor: Day 21 - 35 428.56 None
FCR (not corrected): Day 00 - 07 1.064 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.659 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 2.081 None
Feed to Conversion Ratio: Day 00 - 07 1.064 g/g
Feed to Conversion Ratio: Day 00 - 35 1.6 g/g
Feed to Conversion Ratio: Day 21 - 35 1.938 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=97.50 P1=2.50 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=37.14 P1=40.00 P2=17.14 P3=2.86 P4=2.86 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=36.36 P1=36.36 P2=27.27 P3=0.00 P4=0.00 %
Litter at Day 07 5.79 pH
Litter at Day 21 7.66 pH
Litter at Day 35 7 pH
Mean Abdominal fat Yield 1.85 %
Mean Abdominal fat weight 44.78 g
Mean Breast Yield 21.91 %
Mean Breast weight 527.37 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1896.4 g
Mean Carcass Yield 78.86 %
Mean HPT at Day 07 1.3997 ng/ml
Mean HPT at Day 21 0.87942 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 2.9732 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.1427 ng/L
Mean Legs Yield 19.87 %
Mean Legs weight 477.13 g
Mean TBARS 0.0333 mg MDA/kg
Mean carcass body weight 2403 g
Mean feather cortisol at Day 07 8.9467 pg/mg
Mean feather cortisol at Day 21 8.3233 pg/mg
Mean feather cortisol at Day 35 12.288 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5 %
Mortality without culleds: Day 21 - 35 5.88 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 5.88 %
Pen code CA04 None

Sample metadata

Marker Measurement Units
Animal code CA04.04 None
Breed Cobb None
C-Reactive protein 0.06 pg/ml
Chicken body weight 219.4 g
Feather cortisol 9.33 pg/mg
Haptoglobin 1024.4 ng/ml
Lipopolysaccharide 6.67 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None