HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904905: a HoloFood chicken host

Data available for SAMEA112904905


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 12 derived samples
API endpoint
/api/animals/SAMEA112904905 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904905, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.71 g
Average Daily Feed intake: Day 00 - 35 94.34 g
Average Daily Feed intake: Day 07 - 21 65.62 g
Average Daily Feed intake: Day 21 - 35 165.26 g
Average Daily Gain: Day 00 - 07 17.4 g
Average Daily Gain: Day 00 - 35 58.16 g
Average Daily Gain: Day 07 - 21 51.72 g
Average Daily Gain: Day 21 - 35 84.97 g
Average European Performance Efficiency Factor: Day 00 - 07 146.26 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.269 None
Average Feed to Conversion Ratio: Day 07 - 21 1.269 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.75 g
Average body weight at day 07 164.58 g
Average body weight at day 21 888.71 g
Average body weight at day 35 2078.3 g
European Performance Efficiency Factor: Day 00 - 35 358.53 None
European Performance Efficiency Factor: Day 07 - 21 407.73 None
European Performance Efficiency Factor: Day 21 - 35 436.88 None
FCR (not corrected): Day 00 - 07 1.19 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.622 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.945 None
Feed to Conversion Ratio: Day 00 - 07 1.19 g/g
Feed to Conversion Ratio: Day 00 - 35 1.622 g/g
Feed to Conversion Ratio: Day 21 - 35 1.945 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=60.61 P1=24.24 P2=15.15 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=40.74 P1=33.33 P2=25.93 P3=0.00 P4=0.00 %
Litter at Day 07 5.75 pH
Litter at Day 21 7.33 pH
Litter at Day 35 7.34 pH
Mean Abdominal fat Yield 1.61 %
Mean Abdominal fat weight 38.5 g
Mean Breast Yield 20.36 %
Mean Breast weight 484.85 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1820.2 g
Mean Carcass Yield 76.41 %
Mean HPT at Day 07 2.1097 ng/ml
Mean HPT at Day 21 0.61434 ng/ml
Mean HPT at Day 35 0.71075 ng/ml
Mean LPS at Day 07 3.6594 ng/L
Mean LPS at Day 21 4.2038 ng/L
Mean LPS at Day 35 6.9183 ng/L
Mean Legs Yield 19.63 %
Mean Legs weight 467.65 g
Mean TBARS 0.03 mg MDA/kg
Mean carcass body weight 2380.7 g
Mean feather cortisol at Day 07 16.587 pg/mg
Mean feather cortisol at Day 21 13.848 pg/mg
Mean feather cortisol at Day 35 16.002 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA20 None

Sample metadata

Marker Measurement Units
Animal code CA20.13 None
Breed Cobb None
C-Reactive protein 1.41 pg/ml
Chicken body weight 2091.2 g
Feather cortisol 16.85 pg/mg
Haptoglobin 34.82 ng/ml
Lipopolysaccharide 46.11 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None