MGYG000308390

Taxonomy

Harrysmithimonas galli Bacteria > Firmicutes > Bacilli > CAJFEE01 > CAJFEE01 > Harrysmithimonas > Harrysmithimonas galli

Cluster representative

MGYG000316324

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316324 on MGnify
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Annotations

MGYG000308390’s cluster representative genome MGYG000316324 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316324 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308390 Copy API Endpoint

MGYG000308390’s cluster representative (MGYG000316324) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316324’s sequence. Because MGYG000308390 has been clustered with MGYG000316324 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308390.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316324

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA14099422	SAMEA112905377	Control
1.00	SAMEA7571848	SAMEA112905284	Prebiotic
1.00	SAMEA7697609	SAMEA112905326	Probiotic
1.00	SAMEA10454445	SAMEA112905269	Probiotic
1.00	SAMEA7571794	SAMEA112904960	Prebiotic
0.99	SAMEA7025274	SAMEA112905263	Probiotic
0.99	SAMEA10105071	SAMEA112904878	Prebiotic
0.99	SAMEA7722479	SAMEA112905115	Prebiotic
0.98	SAMEA7025286	SAMEA112904985	Prebiotic
0.98	SAMEA10159267	SAMEA112905062	Control