HoloFood Data Portal

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Details for MGYG000308390, a genome assembled from HoloFood chicken metagenomes

Genome details
Harrysmithimonas galli Bacteria > Firmicutes > Bacilli > CAJFEE01 > CAJFEE01 > Harrysmithimonas > Harrysmithimonas galli
Cluster representative


Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316324 on MGnify
 Show other genomes in cluster

MGYG000308390’s cluster representative genome MGYG000316324 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316324 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308390 Copy API Endpoint
Samples containing this genome

MGYG000308390’s cluster representative (MGYG000316324) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316324’s sequence. Because MGYG000308390 has been clustered with MGYG000316324 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308390.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316324

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA14099422 Control
1.00 SAMEA7571848 Prebiotic
1.00 SAMEA7697609 Probiotic
1.00 SAMEA10454445 Probiotic
1.00 SAMEA7571794 Prebiotic
0.99 SAMEA7025274 Probiotic
0.99 SAMEA10105071 Prebiotic
0.99 SAMEA7722479 Prebiotic
0.98 SAMEA7025286 Prebiotic
0.98 SAMEA10159267 Control