HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905326: a HoloFood chicken host

Data available for SAMEA112905326


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905326 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905326, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.61 g
Average Daily Feed intake: Day 00 - 35 69.41 g
Average Daily Feed intake: Day 07 - 21 62.96 g
Average Daily Feed intake: Day 21 - 35 102.72 g
Average Daily Gain: Day 00 - 07 21.69 g
Average Daily Gain: Day 00 - 35 49.25 g
Average Daily Gain: Day 07 - 21 45.25 g
Average Daily Gain: Day 21 - 35 67.02 g
Average European Performance Efficiency Factor: Day 00 - 07 212.22 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.392 None
Average Feed to Conversion Ratio: Day 07 - 21 1.392 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.29 g
Average body weight at day 07 194.14 g
Average body weight at day 21 827.59 g
Average body weight at day 35 1765.9 g
European Performance Efficiency Factor: Day 00 - 35 322.51 None
European Performance Efficiency Factor: Day 07 - 21 325.15 None
European Performance Efficiency Factor: Day 21 - 35 407.16 None
FCR (not corrected): Day 00 - 07 1.005 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.467 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.672 None
Feed to Conversion Ratio: Day 00 - 07 0.996 g/g
Feed to Conversion Ratio: Day 00 - 35 1.41 g/g
Feed to Conversion Ratio: Day 21 - 35 1.533 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.69 pH
Litter at Day 21 8.32 pH
Litter at Day 35 8.65 pH
Mean Abdominal fat Yield 1.61 %
Mean Abdominal fat weight 31.62 g
Mean Breast Yield 17.43 %
Mean Breast weight 336.62 g
Mean CRP at Day 07 2.1745 pg/mg
Mean CRP at Day 21 1.4393 pg/mg
Mean CRP at Day 35 1.2248 pg/mg
Mean Carcass Weight 1475 g
Mean Carcass Yield 76.33 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.61884 ng/ml
Mean HPT at Day 35 0.8111 ng/ml
Mean LPS at Day 07 3.9939 ng/L
Mean LPS at Day 21 6.506 ng/L
Mean LPS at Day 35 2.9732 ng/L
Mean Legs Yield 20.57 %
Mean Legs weight 397.45 g
Mean TBARS 0.0367 mg MDA/kg
Mean carcass body weight 1933.3 g
Mean feather cortisol at Day 07 6.355 pg/mg
Mean feather cortisol at Day 21 8.52 pg/mg
Mean feather cortisol at Day 35 15.042 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5.13 %
Mortality without culleds: Day 21 - 35 6.9 %
Mortality: Day 00 - 07 2.56 %
Mortality: Day 00 - 35 7.69 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 6.9 %
Pen code CC04 None

Sample metadata

Marker Measurement Units
Animal code CC04.09 None
Breed Ross None
C-Reactive protein 3.86 pg/ml
Chicken body weight 902 g
Feather cortisol 9.65 pg/mg
Haptoglobin 57.08 ng/ml
Lipopolysaccharide 45.33 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None