HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905115: a HoloFood chicken host

Data available for SAMEA112905115


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 11 derived samples
API endpoint
/api/animals/SAMEA112905115 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905115, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.69 g
Average Daily Feed intake: Day 00 - 35 77.21 g
Average Daily Feed intake: Day 07 - 21 78.62 g
Average Daily Feed intake: Day 21 - 35 106.15 g
Average Daily Gain: Day 00 - 07 21.14 g
Average Daily Gain: Day 00 - 35 48.55 g
Average Daily Gain: Day 07 - 21 47.5 g
Average Daily Gain: Day 21 - 35 63.3 g
Average European Performance Efficiency Factor: Day 00 - 07 215.98 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.655 None
Average Feed to Conversion Ratio: Day 07 - 21 1.655 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.12 g
Average body weight at day 07 193.11 g
Average body weight at day 21 858.06 g
Average body weight at day 35 1744.2 g
European Performance Efficiency Factor: Day 00 - 35 305.23 None
European Performance Efficiency Factor: Day 07 - 21 286.94 None
European Performance Efficiency Factor: Day 21 - 35 377.44 None
FCR (not corrected): Day 00 - 07 0.979 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.59 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.677 None
Feed to Conversion Ratio: Day 00 - 07 0.979 g/g
Feed to Conversion Ratio: Day 00 - 35 1.59 g/g
Feed to Conversion Ratio: Day 21 - 35 1.677 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 6.1 pH
Litter at Day 21 7.49 pH
Litter at Day 35 8.06 pH
Mean Abdominal fat Yield 0.68 %
Mean Abdominal fat weight 12.48 g
Mean Breast Yield 15.62 %
Mean Breast weight 286.23 g
Mean CRP at Day 07 2.2943 pg/mg
Mean CRP at Day 21 2.2607 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1334.5 g
Mean Carcass Yield 73.16 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.73114 ng/ml
Mean LPS at Day 07 4.6959 ng/L
Mean LPS at Day 21 3.5134 ng/L
Mean LPS at Day 35 3.3223 ng/L
Mean Legs Yield 21.2 %
Mean Legs weight 386.73 g
Mean TBARS 0.0367 mg MDA/kg
Mean carcass body weight 1825 g
Mean feather cortisol at Day 07 7.925 pg/mg
Mean feather cortisol at Day 21 7.535 pg/mg
Mean feather cortisol at Day 35 7.6733 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC07 None

Sample metadata

Marker Measurement Units
Animal code CC07.07 None
Breed Ross None
C-Reactive protein 1.64 pg/ml
Chicken body weight 870 g
Feather cortisol 8.7 pg/mg
Haptoglobin 16.87 ng/ml
Lipopolysaccharide 4.6 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None