HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904878: a HoloFood chicken host

Data available for SAMEA112904878


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904878 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904878, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.32 g
Average Daily Feed intake: Day 00 - 35 71.73 g
Average Daily Feed intake: Day 07 - 21 60.47 g
Average Daily Feed intake: Day 21 - 35 110.93 g
Average Daily Gain: Day 00 - 07 21.27 g
Average Daily Gain: Day 00 - 35 51.49 g
Average Daily Gain: Day 07 - 21 45.25 g
Average Daily Gain: Day 21 - 35 72.86 g
Average European Performance Efficiency Factor: Day 00 - 07 201.55 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.336 None
Average Feed to Conversion Ratio: Day 07 - 21 1.336 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.56 g
Average body weight at day 07 192.43 g
Average body weight at day 21 825.86 g
Average body weight at day 35 1845.8 g
European Performance Efficiency Factor: Day 00 - 35 351.19 None
European Performance Efficiency Factor: Day 07 - 21 338.55 None
European Performance Efficiency Factor: Day 21 - 35 478.49 None
FCR (not corrected): Day 00 - 07 1.023 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.396 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.523 None
Feed to Conversion Ratio: Day 00 - 07 1.002 g/g
Feed to Conversion Ratio: Day 00 - 35 1.393 g/g
Feed to Conversion Ratio: Day 21 - 35 1.523 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=95.24 P1=4.76 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.63 pH
Litter at Day 21 7.66 pH
Litter at Day 35 8.49 pH
Mean Abdominal fat Yield 1.3 %
Mean Abdominal fat weight 26.47 g
Mean Breast Yield 18.03 %
Mean Breast weight 361.3 g
Mean CRP at Day 07 2.1401 pg/mg
Mean CRP at Day 21 1.7206 pg/mg
Mean CRP at Day 35 1.208 pg/mg
Mean Carcass Weight 1560.8 g
Mean Carcass Yield 78.15 %
Mean HPT at Day 07 0.69429 ng/ml
Mean HPT at Day 21 0.69734 ng/ml
Mean HPT at Day 35 0.83627 ng/ml
Mean LPS at Day 07 6.5471 ng/L
Mean LPS at Day 21 3.1747 ng/L
Mean LPS at Day 35 6.5359 ng/L
Mean Legs Yield 20.89 %
Mean Legs weight 417.25 g
Mean TBARS 0.04 mg MDA/kg
Mean carcass body weight 2000 g
Mean feather cortisol at Day 07 7.495 pg/mg
Mean feather cortisol at Day 21 13.003 pg/mg
Mean feather cortisol at Day 35 14.37 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC24 None

Sample metadata

Marker Measurement Units
Animal code CC24.12 None
Breed Ross None
C-Reactive protein 2.83 pg/ml
Chicken body weight 706 g
Feather cortisol 14.17 pg/mg
Haptoglobin 50.13 ng/ml
Lipopolysaccharide 7.93 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None