HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905263: a HoloFood chicken host

Data available for SAMEA112905263


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905263 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905263, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.36 g
Average Daily Feed intake: Day 00 - 35 71.43 g
Average Daily Feed intake: Day 07 - 21 60.37 g
Average Daily Feed intake: Day 21 - 35 109.37 g
Average Daily Gain: Day 00 - 07 20.49 g
Average Daily Gain: Day 00 - 35 50.03 g
Average Daily Gain: Day 07 - 21 42.84 g
Average Daily Gain: Day 21 - 35 72 g
Average European Performance Efficiency Factor: Day 00 - 07 191.69 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.409 None
Average Feed to Conversion Ratio: Day 07 - 21 1.409 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 46.85 g
Average body weight at day 07 190.28 g
Average body weight at day 21 790 g
Average body weight at day 35 1798 g
European Performance Efficiency Factor: Day 00 - 35 341.68 None
European Performance Efficiency Factor: Day 07 - 21 303.95 None
European Performance Efficiency Factor: Day 21 - 35 473.97 None
FCR (not corrected): Day 00 - 07 1.051 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.429 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.519 None
Feed to Conversion Ratio: Day 00 - 07 1.042 g/g
Feed to Conversion Ratio: Day 00 - 35 1.428 g/g
Feed to Conversion Ratio: Day 21 - 35 1.519 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=96.30 P1=3.70 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=95.24 P1=4.76 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 6.04 pH
Litter at Day 21 7.72 pH
Litter at Day 35 8.43 pH
Mean Abdominal fat Yield 1.18 %
Mean Abdominal fat weight 23.76 g
Mean Breast Yield 16.01 %
Mean Breast weight 321.2 g
Mean CRP at Day 07 2.091 pg/mg
Mean CRP at Day 21 3.0293 pg/mg
Mean CRP at Day 35 1.2058 pg/mg
Mean Carcass Weight 1504.1 g
Mean Carcass Yield 75.23 %
Mean HPT at Day 07 0.62424 ng/ml
Mean HPT at Day 21 0.62738 ng/ml
Mean HPT at Day 35 0.73706 ng/ml
Mean LPS at Day 07 4.8509 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.2065 ng/L
Mean Legs Yield 21.85 %
Mean Legs weight 438.18 g
Mean TBARS 0.07 mg MDA/kg
Mean carcass body weight 2000 g
Mean feather cortisol at Day 07 11.49 pg/mg
Mean feather cortisol at Day 21 8.235 pg/mg
Mean feather cortisol at Day 35 8.8467 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC09 None

Sample metadata

Marker Measurement Units
Animal code CC09.09 None
Breed Ross None
C-Reactive protein 8.93 pg/ml
Chicken body weight 638 g
Feather cortisol 13.17 pg/mg
Haptoglobin 64.8 ng/ml
Lipopolysaccharide 2.33 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None