HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.


Details for MGYG000308382, a genome assembled from HoloFood chicken metagenomes

Genome details
Scybalocola faecipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Scybalocola > Scybalocola faecipullorum
Cluster representative


Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320406 on MGnify
 Show other genomes in cluster

MGYG000308382’s cluster representative genome MGYG000320406 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320406 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308382 Copy API Endpoint
Samples containing this genome

MGYG000308382’s cluster representative (MGYG000320406) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320406’s sequence. Because MGYG000308382 has been clustered with MGYG000320406 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308382.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320406

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA10105063 Prebiotic
1.00 SAMEA7025260 Prebiotic
1.00 SAMEA7697588 Probiotic
1.00 SAMEA7025274 Probiotic
1.00 SAMEA7025259 Prebiotic
0.93 SAMEA7025248 Probiotic
0.92 SAMEA7025261 Probiotic
0.92 SAMEA10104930 Control
0.88 SAMEA7025267 Control
0.88 SAMEA7025278 Prebiotic