MGYG000308382

Taxonomy

Scybalocola faecipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Scybalocola > Scybalocola faecipullorum

Cluster representative

MGYG000320406

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320406 on MGnify
 Show other genomes in cluster

Annotations

MGYG000308382’s cluster representative genome MGYG000320406 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320406 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308382 Copy API Endpoint

MGYG000308382’s cluster representative (MGYG000320406) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320406’s sequence. Because MGYG000308382 has been clustered with MGYG000320406 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308382.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320406

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10105063	SAMEA112904805	Prebiotic
1.00	SAMEA7025260	SAMEA112905317	Prebiotic
1.00	SAMEA7697588	SAMEA112905360	Probiotic
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA7025259	SAMEA112905304	Prebiotic
0.93	SAMEA7025248	SAMEA112905319	Probiotic
0.92	SAMEA7025261	SAMEA112905342	Probiotic
0.92	SAMEA10104930	SAMEA112905365	Control
0.88	SAMEA7025267	SAMEA112904847	Control
0.88	SAMEA7025278	SAMEA112904794	Prebiotic