HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904805: a HoloFood chicken host

Data available for SAMEA112904805


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904805 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904805, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.98 g
Average Daily Feed intake: Day 00 - 35 87.65 g
Average Daily Feed intake: Day 07 - 21 73.15 g
Average Daily Feed intake: Day 21 - 35 140.54 g
Average Daily Gain: Day 00 - 07 21.9 g
Average Daily Gain: Day 00 - 35 60.31 g
Average Daily Gain: Day 07 - 21 55.27 g
Average Daily Gain: Day 21 - 35 84.54 g
Average European Performance Efficiency Factor: Day 00 - 07 211.54 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.324 None
Average Feed to Conversion Ratio: Day 07 - 21 1.324 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 46.1 g
Average body weight at day 07 199.41 g
Average body weight at day 21 973.21 g
Average body weight at day 35 2156.8 g
European Performance Efficiency Factor: Day 00 - 35 373.44 None
European Performance Efficiency Factor: Day 07 - 21 417.61 None
European Performance Efficiency Factor: Day 21 - 35 490.41 None
FCR (not corrected): Day 00 - 07 0.986 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.47 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.692 None
Feed to Conversion Ratio: Day 00 - 07 0.958 g/g
Feed to Conversion Ratio: Day 00 - 35 1.453 g/g
Feed to Conversion Ratio: Day 21 - 35 1.662 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=36.84 P1=36.84 P2=15.79 P3=10.53 P4=0.00 %
Litter at Day 07 6.95 pH
Litter at Day 21 7.78 pH
Litter at Day 35 8.38 pH
Mean Abdominal fat Yield 1.02 %
Mean Abdominal fat weight 21.07 g
Mean Breast Yield 16.47 %
Mean Breast weight 340.3 g
Mean CRP at Day 07 1.9379 pg/mg
Mean CRP at Day 21 2.0329 pg/mg
Mean CRP at Day 35 1.1071 pg/mg
Mean Carcass Weight 1534.6 g
Mean Carcass Yield 74.92 %
Mean HPT at Day 07 0.95102 ng/ml
Mean HPT at Day 21 0.87327 ng/ml
Mean HPT at Day 35 0.75228 ng/ml
Mean LPS at Day 07 6.3861 ng/L
Mean LPS at Day 21 3.1962 ng/L
Mean LPS at Day 35 6.6561 ng/L
Mean Legs Yield 20.84 %
Mean Legs weight 424.17 g
Mean TBARS 0.0467 mg MDA/kg
Mean carcass body weight 2050 g
Mean feather cortisol at Day 07 9.355 pg/mg
Mean feather cortisol at Day 21 7.7417 pg/mg
Mean feather cortisol at Day 35 24.15 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 2.5 %
Mortality without culleds: Day 21 - 35 3.57 %
Mortality: Day 00 - 07 7.5 %
Mortality: Day 00 - 35 10 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 3.57 %
Pen code CC23 None

Sample metadata

Marker Measurement Units
Animal code CC23.04 None
Breed Cobb None
C-Reactive protein 9.37 pg/ml
Chicken body weight 233.2 g
Feather cortisol 15.23 pg/mg
Haptoglobin 16.25 ng/ml
Lipopolysaccharide 41.89 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None