HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904794: a HoloFood chicken host

Data available for SAMEA112904794


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112904794 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904794, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.17 g
Average Daily Feed intake: Day 00 - 35 88.29 g
Average Daily Feed intake: Day 07 - 21 74.79 g
Average Daily Feed intake: Day 21 - 35 138.68 g
Average Daily Gain: Day 00 - 07 22.11 g
Average Daily Gain: Day 00 - 35 62 g
Average Daily Gain: Day 07 - 21 56.44 g
Average Daily Gain: Day 21 - 35 87.49 g
Average European Performance Efficiency Factor: Day 00 - 07 225.05 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.325 None
Average Feed to Conversion Ratio: Day 07 - 21 1.325 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.65 g
Average body weight at day 07 199.43 g
Average body weight at day 21 989.66 g
Average body weight at day 35 2214.6 g
European Performance Efficiency Factor: Day 00 - 35 424.21 None
European Performance Efficiency Factor: Day 07 - 21 426 None
European Performance Efficiency Factor: Day 21 - 35 552 None
FCR (not corrected): Day 00 - 07 0.963 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.425 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.585 None
Feed to Conversion Ratio: Day 00 - 07 0.957 g/g
Feed to Conversion Ratio: Day 00 - 35 1.424 g/g
Feed to Conversion Ratio: Day 21 - 35 1.585 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=70.00 P1=25.00 P2=5.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.86 pH
Litter at Day 21 7.8 pH
Litter at Day 35 8.45 pH
Mean Abdominal fat Yield 1.38 %
Mean Abdominal fat weight 32.65 g
Mean Breast Yield 17.4 %
Mean Breast weight 418.18 g
Mean CRP at Day 07 2.1911 pg/mg
Mean CRP at Day 21 2.5562 pg/mg
Mean CRP at Day 35 1.1071 pg/mg
Mean Carcass Weight 1827.6 g
Mean Carcass Yield 76.67 %
Mean HPT at Day 07 0.69508 ng/ml
Mean HPT at Day 21 0.95414 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 5.3941 ng/L
Mean LPS at Day 21 3.0804 ng/L
Mean LPS at Day 35 5.8736 ng/L
Mean Legs Yield 21.59 %
Mean Legs weight 514.5 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 2383.3 g
Mean feather cortisol at Day 07 8.3633 pg/mg
Mean feather cortisol at Day 21 14.867 pg/mg
Mean feather cortisol at Day 35 12.792 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.56 %
Mortality: Day 00 - 35 2.56 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC12 None

Sample metadata

Marker Measurement Units
Animal code CC12.06 None
Breed Cobb None
C-Reactive protein 6.69 pg/ml
Chicken body weight 206.3 g
Feather cortisol 5.65 pg/mg
Haptoglobin 33.67 ng/ml
Lipopolysaccharide 33.2 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None