HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905342: a HoloFood chicken host

Data available for SAMEA112905342


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 10 derived samples
API endpoint
/api/animals/SAMEA112905342 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905342, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.57 g
Average Daily Feed intake: Day 00 - 35 96.62 g
Average Daily Feed intake: Day 07 - 21 77.33 g
Average Daily Feed intake: Day 21 - 35 157.41 g
Average Daily Gain: Day 00 - 07 19.34 g
Average Daily Gain: Day 00 - 35 63.42 g
Average Daily Gain: Day 07 - 21 55.84 g
Average Daily Gain: Day 21 - 35 93.04 g
Average European Performance Efficiency Factor: Day 00 - 07 181.9 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.385 None
Average Feed to Conversion Ratio: Day 07 - 21 1.385 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.59 g
Average body weight at day 07 180 g
Average body weight at day 21 961.76 g
Average body weight at day 35 2264.3 g
European Performance Efficiency Factor: Day 00 - 35 416.26 None
European Performance Efficiency Factor: Day 07 - 21 403.2 None
European Performance Efficiency Factor: Day 21 - 35 549.89 None
FCR (not corrected): Day 00 - 07 1.063 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.524 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.692 None
Feed to Conversion Ratio: Day 00 - 07 1.063 g/g
Feed to Conversion Ratio: Day 00 - 35 1.524 g/g
Feed to Conversion Ratio: Day 21 - 35 1.692 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=86.21 P1=6.90 P2=6.90 P3=0.00 P4=0.00 %
Litter at Day 07 8.77 pH
Litter at Day 21 8.2 pH
Litter at Day 35 8.16 pH
Mean Abdominal fat Yield 1.45 %
Mean Abdominal fat weight 39.73 g
Mean Breast Yield 19.9 %
Mean Breast weight 543.83 g
Mean CRP at Day 07 1.8375 pg/mg
Mean CRP at Day 21 1.2852 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 2101.6 g
Mean Carcass Yield 77.02 %
Mean HPT at Day 07 2.5698 ng/ml
Mean HPT at Day 21 0.99455 ng/ml
Mean HPT at Day 35 0.73906 ng/ml
Mean LPS at Day 07 6.7979 ng/L
Mean LPS at Day 21 4.7206 ng/L
Mean LPS at Day 35 5.4319 ng/L
Mean Legs Yield 21.1 %
Mean Legs weight 575.15 g
Mean TBARS 0.0867 mg MDA/kg
Mean carcass body weight 2728.3 g
Mean feather cortisol at Day 07 9.6533 pg/mg
Mean feather cortisol at Day 21 8.2033 pg/mg
Mean feather cortisol at Day 35 26.387 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB08 None

Sample metadata

Marker Measurement Units
Animal code CB08.08 None
Breed Cobb None
C-Reactive protein 0.87 pg/ml
Chicken body weight 973.8 g
Feather cortisol 13.98 pg/mg
Haptoglobin 34.19 ng/ml
Lipopolysaccharide 34.95 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None