HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904847: a HoloFood chicken host

Data available for SAMEA112904847


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112904847 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904847, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.75 g
Average Daily Feed intake: Day 00 - 35 90.26 g
Average Daily Feed intake: Day 07 - 21 70.98 g
Average Daily Feed intake: Day 21 - 35 148.38 g
Average Daily Gain: Day 00 - 07 18.97 g
Average Daily Gain: Day 00 - 35 59.89 g
Average Daily Gain: Day 07 - 21 52.59 g
Average Daily Gain: Day 21 - 35 87.64 g
Average European Performance Efficiency Factor: Day 00 - 07 182.15 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.35 None
Average Feed to Conversion Ratio: Day 07 - 21 1.35 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 39.73 g
Average body weight at day 07 172.5 g
Average body weight at day 21 908.82 g
Average body weight at day 35 2135.7 g
European Performance Efficiency Factor: Day 00 - 35 397.32 None
European Performance Efficiency Factor: Day 07 - 21 389.7 None
European Performance Efficiency Factor: Day 21 - 35 517.58 None
FCR (not corrected): Day 00 - 07 1.041 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.507 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.693 None
Feed to Conversion Ratio: Day 00 - 07 1.041 g/g
Feed to Conversion Ratio: Day 00 - 35 1.507 g/g
Feed to Conversion Ratio: Day 21 - 35 1.693 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=85.29 P1=14.71 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=89.29 P1=10.71 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 8.36 pH
Litter at Day 21 8.16 pH
Litter at Day 35 8.44 pH
Mean Abdominal fat Yield 1.31 %
Mean Abdominal fat weight 34.63 g
Mean Breast Yield 18.19 %
Mean Breast weight 479.08 g
Mean CRP at Day 07 1.917 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1983.8 g
Mean Carcass Yield 75.28 %
Mean HPT at Day 07 1.3744 ng/ml
Mean HPT at Day 21 0.80028 ng/ml
Mean HPT at Day 35 0.76576 ng/ml
Mean LPS at Day 07 6.5918 ng/L
Mean LPS at Day 21 4.8088 ng/L
Mean LPS at Day 35 5.5144 ng/L
Mean Legs Yield 20.93 %
Mean Legs weight 551.6 g
Mean TBARS 0.1 mg MDA/kg
Mean carcass body weight 2635 g
Mean feather cortisol at Day 07 10.77 pg/mg
Mean feather cortisol at Day 21 16.625 pg/mg
Mean feather cortisol at Day 35 12.983 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB20 None

Sample metadata

Marker Measurement Units
Animal code CB20.03 None
Breed Ross None
C-Reactive protein 4.19 pg/ml
Chicken body weight 197.4 g
Feather cortisol 11.43 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 39.32 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None