HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905304: a HoloFood chicken host

Data available for SAMEA112905304


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905304 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905304, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.09 g
Average Daily Feed intake: Day 00 - 35 96.69 g
Average Daily Feed intake: Day 07 - 21 79.18 g
Average Daily Feed intake: Day 21 - 35 157.02 g
Average Daily Gain: Day 00 - 07 19.15 g
Average Daily Gain: Day 00 - 35 63.31 g
Average Daily Gain: Day 07 - 21 57.42 g
Average Daily Gain: Day 21 - 35 91.27 g
Average European Performance Efficiency Factor: Day 00 - 07 187.37 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.379 None
Average Feed to Conversion Ratio: Day 07 - 21 1.379 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.42 g
Average body weight at day 07 179.49 g
Average body weight at day 21 983.33 g
Average body weight at day 35 2261.1 g
European Performance Efficiency Factor: Day 00 - 35 404.1 None
European Performance Efficiency Factor: Day 07 - 21 416.36 None
European Performance Efficiency Factor: Day 21 - 35 530.51 None
FCR (not corrected): Day 00 - 07 1.007 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.529 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.72 None
Feed to Conversion Ratio: Day 00 - 07 0.997 g/g
Feed to Conversion Ratio: Day 00 - 35 1.527 g/g
Feed to Conversion Ratio: Day 21 - 35 1.72 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=93.94 P1=6.06 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=88.89 P1=7.41 P2=3.70 P3=0.00 P4=0.00 %
Litter at Day 07 8.55 pH
Litter at Day 21 6.54 pH
Litter at Day 35 7.61 pH
Mean Abdominal fat Yield 1.5 %
Mean Abdominal fat weight 39.97 g
Mean Breast Yield 20.41 %
Mean Breast weight 544.93 g
Mean CRP at Day 07 1.9844 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 2028.1 g
Mean Carcass Yield 75.79 %
Mean HPT at Day 07 2.6119 ng/ml
Mean HPT at Day 21 0.75908 ng/ml
Mean HPT at Day 35 0.75593 ng/ml
Mean LPS at Day 07 6.9488 ng/L
Mean LPS at Day 21 4.4687 ng/L
Mean LPS at Day 35 5.6902 ng/L
Mean Legs Yield 19.66 %
Mean Legs weight 526.43 g
Mean TBARS 0.0733 mg MDA/kg
Mean carcass body weight 2673.3 g
Mean feather cortisol at Day 07 9.6967 pg/mg
Mean feather cortisol at Day 21 15.032 pg/mg
Mean feather cortisol at Day 35 20.757 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB07 None

Sample metadata

Marker Measurement Units
Animal code CB07.06 None
Breed Cobb None
C-Reactive protein 3.76 pg/ml
Chicken body weight 226.8 g
Feather cortisol 12.51 pg/mg
Haptoglobin 1883 ng/ml
Lipopolysaccharide 44.92 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None