HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905317: a HoloFood chicken host

Data available for SAMEA112905317


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905317 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905317, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.09 g
Average Daily Feed intake: Day 00 - 35 96.69 g
Average Daily Feed intake: Day 07 - 21 79.18 g
Average Daily Feed intake: Day 21 - 35 157.02 g
Average Daily Gain: Day 00 - 07 19.15 g
Average Daily Gain: Day 00 - 35 63.31 g
Average Daily Gain: Day 07 - 21 57.42 g
Average Daily Gain: Day 21 - 35 91.27 g
Average European Performance Efficiency Factor: Day 00 - 07 187.37 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.379 None
Average Feed to Conversion Ratio: Day 07 - 21 1.379 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.42 g
Average body weight at day 07 179.49 g
Average body weight at day 21 983.33 g
Average body weight at day 35 2261.1 g
European Performance Efficiency Factor: Day 00 - 35 404.1 None
European Performance Efficiency Factor: Day 07 - 21 416.36 None
European Performance Efficiency Factor: Day 21 - 35 530.51 None
FCR (not corrected): Day 00 - 07 1.007 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.529 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.72 None
Feed to Conversion Ratio: Day 00 - 07 0.997 g/g
Feed to Conversion Ratio: Day 00 - 35 1.527 g/g
Feed to Conversion Ratio: Day 21 - 35 1.72 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=93.94 P1=6.06 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=88.89 P1=7.41 P2=3.70 P3=0.00 P4=0.00 %
Litter at Day 07 8.55 pH
Litter at Day 21 6.54 pH
Litter at Day 35 7.61 pH
Mean Abdominal fat Yield 1.5 %
Mean Abdominal fat weight 39.97 g
Mean Breast Yield 20.41 %
Mean Breast weight 544.93 g
Mean CRP at Day 07 1.9844 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 2028.1 g
Mean Carcass Yield 75.79 %
Mean HPT at Day 07 2.6119 ng/ml
Mean HPT at Day 21 0.75908 ng/ml
Mean HPT at Day 35 0.75593 ng/ml
Mean LPS at Day 07 6.9488 ng/L
Mean LPS at Day 21 4.4687 ng/L
Mean LPS at Day 35 5.6902 ng/L
Mean Legs Yield 19.66 %
Mean Legs weight 526.43 g
Mean TBARS 0.0733 mg MDA/kg
Mean carcass body weight 2673.3 g
Mean feather cortisol at Day 07 9.6967 pg/mg
Mean feather cortisol at Day 21 15.032 pg/mg
Mean feather cortisol at Day 35 20.757 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB07 None

Sample metadata

Marker Measurement Units
Animal code CB07.09 None
Breed Cobb None
C-Reactive protein 0.29 pg/ml
Chicken body weight 1044.5 g
Feather cortisol 9.78 pg/mg
Haptoglobin 22.35 ng/ml
Lipopolysaccharide 32.5 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None