HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.


Details for MGYG000308381, a genome assembled from HoloFood chicken metagenomes

Genome details
Acutalibacter ornithocaccae Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Acutalibacter > Acutalibacter ornithocaccae
Cluster representative


Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310807 on MGnify
 Show other genomes in cluster

MGYG000308381’s cluster representative genome MGYG000310807 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310807 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308381 Copy API Endpoint
Samples containing this genome

MGYG000308381’s cluster representative (MGYG000310807) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310807’s sequence. Because MGYG000308381 has been clustered with MGYG000310807 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308381.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310807

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA7025259 Prebiotic
0.99 SAMEA7697583 Probiotic
0.99 SAMEA9449947 Prebiotic
0.99 SAMEA10145583 Control
0.99 SAMEA7697581 Probiotic
0.99 SAMEA7025260 Prebiotic
0.99 SAMEA7697602 Probiotic
0.99 SAMEA10104957 Control
0.99 SAMEA7025254 Prebiotic
0.99 SAMEA14409936 Control