HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904883: a HoloFood chicken host

Data available for SAMEA112904883


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 10 derived samples
API endpoint
/api/animals/SAMEA112904883 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904883, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.39 g
Average Daily Feed intake: Day 00 - 35 89.4 g
Average Daily Feed intake: Day 07 - 21 74.43 g
Average Daily Feed intake: Day 21 - 35 142.05 g
Average Daily Gain: Day 00 - 07 18.6 g
Average Daily Gain: Day 00 - 35 58.23 g
Average Daily Gain: Day 07 - 21 52.93 g
Average Daily Gain: Day 21 - 35 83.33 g
Average European Performance Efficiency Factor: Day 00 - 07 165.45 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.406 None
Average Feed to Conversion Ratio: Day 07 - 21 1.406 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.42 g
Average body weight at day 07 175.64 g
Average body weight at day 21 916.67 g
Average body weight at day 35 2083.3 g
European Performance Efficiency Factor: Day 00 - 35 369.73 None
European Performance Efficiency Factor: Day 07 - 21 376.4 None
European Performance Efficiency Factor: Day 21 - 35 488.87 None
FCR (not corrected): Day 00 - 07 1.115 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.538 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.705 None
Feed to Conversion Ratio: Day 00 - 07 1.096 g/g
Feed to Conversion Ratio: Day 00 - 35 1.535 g/g
Feed to Conversion Ratio: Day 21 - 35 1.705 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=88.89 P1=7.41 P2=3.70 P3=0.00 P4=0.00 %
Litter at Day 07 5.69 pH
Litter at Day 21 6.54 pH
Litter at Day 35 7.76 pH
Mean Abdominal fat Yield 1.52 %
Mean Abdominal fat weight 35.22 g
Mean Breast Yield 21.31 %
Mean Breast weight 490.15 g
Mean CRP at Day 07 2.1993 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1795.2 g
Mean Carcass Yield 78.16 %
Mean HPT at Day 07 1.0704 ng/ml
Mean HPT at Day 21 0.8006 ng/ml
Mean HPT at Day 35 0.82469 ng/ml
Mean LPS at Day 07 6.8402 ng/L
Mean LPS at Day 21 5.8723 ng/L
Mean LPS at Day 35 5.6998 ng/L
Mean Legs Yield 20.26 %
Mean Legs weight 465.33 g
Mean TBARS 0.0667 mg MDA/kg
Mean carcass body weight 2297.5 g
Mean feather cortisol at Day 07 17.972 pg/mg
Mean feather cortisol at Day 21 14.378 pg/mg
Mean feather cortisol at Day 35 8.0883 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB01 None

Sample metadata

Marker Measurement Units
Animal code CB01.15 None
Breed Cobb None
C-Reactive protein 0.09 pg/ml
Chicken body weight 2077.3 g
Feather cortisol 6.7 pg/mg
Haptoglobin 50.65 ng/ml
Lipopolysaccharide 45.95 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None