HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904743: a HoloFood chicken host

Data available for SAMEA112904743


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
T Has metatranscriptome data
Has metatranscriptome data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 12 derived samples
API endpoint
/api/animals/SAMEA112904743 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904743, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.59 g
Average Daily Feed intake: Day 00 - 35 76.62 g
Average Daily Feed intake: Day 07 - 21 76.4 g
Average Daily Feed intake: Day 21 - 35 105.9 g
Average Daily Gain: Day 00 - 07 20.97 g
Average Daily Gain: Day 00 - 35 46.98 g
Average Daily Gain: Day 07 - 21 43.79 g
Average Daily Gain: Day 21 - 35 63.18 g
Average European Performance Efficiency Factor: Day 00 - 07 198.61 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.745 None
Average Feed to Conversion Ratio: Day 07 - 21 1.745 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.14 g
Average body weight at day 07 191.94 g
Average body weight at day 21 805 g
Average body weight at day 35 1689.6 g
European Performance Efficiency Factor: Day 00 - 35 273.69 None
European Performance Efficiency Factor: Day 07 - 21 251 None
European Performance Efficiency Factor: Day 21 - 35 364.42 None
FCR (not corrected): Day 00 - 07 1.037 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.656 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.728 None
Feed to Conversion Ratio: Day 00 - 07 1.03 g/g
Feed to Conversion Ratio: Day 00 - 35 1.631 g/g
Feed to Conversion Ratio: Day 21 - 35 1.676 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 6.19 pH
Litter at Day 21 7.09 pH
Litter at Day 35 7.13 pH
Mean Abdominal fat Yield 1.14 %
Mean Abdominal fat weight 22.75 g
Mean Breast Yield 15.62 %
Mean Breast weight 307.62 g
Mean CRP at Day 07 1.7984 pg/mg
Mean CRP at Day 21 2.1351 pg/mg
Mean CRP at Day 35 1.204 pg/mg
Mean Carcass Weight 1469.2 g
Mean Carcass Yield 75.18 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.69813 ng/ml
Mean HPT at Day 35 0.6383 ng/ml
Mean LPS at Day 07 4.4653 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.7147 ng/L
Mean Legs Yield 21.76 %
Mean Legs weight 423.68 g
Mean TBARS 0.06 mg MDA/kg
Mean carcass body weight 1950 g
Mean feather cortisol at Day 07 9.1283 pg/mg
Mean feather cortisol at Day 21 9.7717 pg/mg
Mean feather cortisol at Day 35 8.665 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 2.5 %
Mortality without culleds: Day 21 - 35 3.33 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 3.33 %
Pen code CC08 None

Sample metadata

Marker Measurement Units
Animal code CC08.13 None
Breed Ross None
C-Reactive protein 2.19 pg/ml
Chicken body weight 1866 g
Feather cortisol 12.17 pg/mg
Haptoglobin 17.25 ng/ml
Lipopolysaccharide 10.05 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None