HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905015: a HoloFood chicken host

Data available for SAMEA112905015


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905015 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905015, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 22.12 g
Average Daily Feed intake: Day 00 - 35 96.74 g
Average Daily Feed intake: Day 07 - 21 84.12 g
Average Daily Feed intake: Day 21 - 35 149.2 g
Average Daily Gain: Day 00 - 07 22.97 g
Average Daily Gain: Day 00 - 35 66.61 g
Average Daily Gain: Day 07 - 21 58.3 g
Average Daily Gain: Day 21 - 35 96.74 g
Average European Performance Efficiency Factor: Day 00 - 07 238.58 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.443 None
Average Feed to Conversion Ratio: Day 07 - 21 1.443 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.62 g
Average body weight at day 07 205.42 g
Average body weight at day 21 1021.7 g
Average body weight at day 35 2376.1 g
European Performance Efficiency Factor: Day 00 - 35 458.71 None
European Performance Efficiency Factor: Day 07 - 21 404.11 None
European Performance Efficiency Factor: Day 21 - 35 627.31 None
FCR (not corrected): Day 00 - 07 0.963 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.452 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.542 None
Feed to Conversion Ratio: Day 00 - 07 0.963 g/g
Feed to Conversion Ratio: Day 00 - 35 1.452 g/g
Feed to Conversion Ratio: Day 21 - 35 1.542 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=66.67 P1=19.05 P2=9.52 P3=4.76 P4=0.00 %
Litter at Day 07 5.82 pH
Litter at Day 21 8.26 pH
Litter at Day 35 8.45 pH
Mean Abdominal fat Yield 1.46 %
Mean Abdominal fat weight 37.95 g
Mean Breast Yield 17.45 %
Mean Breast weight 456.57 g
Mean CRP at Day 07 2.3419 pg/mg
Mean CRP at Day 21 1.8476 pg/mg
Mean CRP at Day 35 1.1579 pg/mg
Mean Carcass Weight 1987.2 g
Mean Carcass Yield 75.94 %
Mean HPT at Day 07 0.70408 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.73335 ng/ml
Mean LPS at Day 07 4.1474 ng/L
Mean LPS at Day 21 6.2027 ng/L
Mean LPS at Day 35 2.9732 ng/L
Mean Legs Yield 21.1 %
Mean Legs weight 553.25 g
Mean TBARS 0.0133 mg MDA/kg
Mean carcass body weight 2616.7 g
Mean feather cortisol at Day 07 7.4683 pg/mg
Mean feather cortisol at Day 21 10.257 pg/mg
Mean feather cortisol at Day 35 33.778 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC01 None

Sample metadata

Marker Measurement Units
Animal code CC01.10 None
Breed Cobb None
C-Reactive protein 2.5 pg/ml
Chicken body weight 1004 g
Feather cortisol 11.87 pg/mg
Haptoglobin 6.83 ng/ml
Lipopolysaccharide 39.35 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None