HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905276: a HoloFood chicken host

Data available for SAMEA112905276


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 5 derived samples
API endpoint
/api/animals/SAMEA112905276 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905276, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.17 g
Average Daily Feed intake: Day 00 - 35 88.29 g
Average Daily Feed intake: Day 07 - 21 74.79 g
Average Daily Feed intake: Day 21 - 35 138.68 g
Average Daily Gain: Day 00 - 07 22.11 g
Average Daily Gain: Day 00 - 35 62 g
Average Daily Gain: Day 07 - 21 56.44 g
Average Daily Gain: Day 21 - 35 87.49 g
Average European Performance Efficiency Factor: Day 00 - 07 225.05 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.325 None
Average Feed to Conversion Ratio: Day 07 - 21 1.325 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.65 g
Average body weight at day 07 199.43 g
Average body weight at day 21 989.66 g
Average body weight at day 35 2214.6 g
European Performance Efficiency Factor: Day 00 - 35 424.21 None
European Performance Efficiency Factor: Day 07 - 21 426 None
European Performance Efficiency Factor: Day 21 - 35 552 None
FCR (not corrected): Day 00 - 07 0.963 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.425 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.585 None
Feed to Conversion Ratio: Day 00 - 07 0.957 g/g
Feed to Conversion Ratio: Day 00 - 35 1.424 g/g
Feed to Conversion Ratio: Day 21 - 35 1.585 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=70.00 P1=25.00 P2=5.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.86 pH
Litter at Day 21 7.8 pH
Litter at Day 35 8.45 pH
Mean Abdominal fat Yield 1.38 %
Mean Abdominal fat weight 32.65 g
Mean Breast Yield 17.4 %
Mean Breast weight 418.18 g
Mean CRP at Day 07 2.1911 pg/mg
Mean CRP at Day 21 2.5562 pg/mg
Mean CRP at Day 35 1.1071 pg/mg
Mean Carcass Weight 1827.6 g
Mean Carcass Yield 76.67 %
Mean HPT at Day 07 0.69508 ng/ml
Mean HPT at Day 21 0.95414 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 5.3941 ng/L
Mean LPS at Day 21 3.0804 ng/L
Mean LPS at Day 35 5.8736 ng/L
Mean Legs Yield 21.59 %
Mean Legs weight 514.5 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 2383.3 g
Mean feather cortisol at Day 07 8.3633 pg/mg
Mean feather cortisol at Day 21 14.867 pg/mg
Mean feather cortisol at Day 35 12.792 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.56 %
Mortality: Day 00 - 35 2.56 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC12 None

Sample metadata

Marker Measurement Units
Animal code CC12.11 None
Breed Cobb None
C-Reactive protein 3.38 pg/ml
Chicken body weight 1146 g
Feather cortisol 15.32 pg/mg
Haptoglobin 186.7 ng/ml
Lipopolysaccharide 5.74 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None