HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905343: a HoloFood chicken host

Data available for SAMEA112905343


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 12 derived samples
API endpoint
/api/animals/SAMEA112905343 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905343, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 18.7 g
Average Daily Feed intake: Day 00 - 35 90.75 g
Average Daily Feed intake: Day 07 - 21 61.14 g
Average Daily Feed intake: Day 21 - 35 162.68 g
Average Daily Gain: Day 00 - 07 17.44 g
Average Daily Gain: Day 00 - 35 52.74 g
Average Daily Gain: Day 07 - 21 46.39 g
Average Daily Gain: Day 21 - 35 76.74 g
Average European Performance Efficiency Factor: Day 00 - 07 162.6 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.318 None
Average Feed to Conversion Ratio: Day 07 - 21 1.318 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 39.74 g
Average body weight at day 07 161.8 g
Average body weight at day 21 811.26 g
Average body weight at day 35 1885.7 g
European Performance Efficiency Factor: Day 00 - 35 306.5 None
European Performance Efficiency Factor: Day 07 - 21 352 None
European Performance Efficiency Factor: Day 21 - 35 362.03 None
FCR (not corrected): Day 00 - 07 1.072 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.721 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 2.12 None
Feed to Conversion Ratio: Day 00 - 07 1.072 g/g
Feed to Conversion Ratio: Day 00 - 35 1.721 g/g
Feed to Conversion Ratio: Day 21 - 35 2.12 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=64.52 P1=29.03 P2=6.45 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=46.15 P1=50.00 P2=3.85 P3=0.00 P4=0.00 %
Litter at Day 07 5.57 pH
Litter at Day 21 6.95 pH
Litter at Day 35 7.88 pH
Mean Abdominal fat Yield 1.43 %
Mean Abdominal fat weight 33.83 g
Mean Breast Yield 20.82 %
Mean Breast weight 491.3 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.1065 pg/mg
Mean Carcass Weight 1817.6 g
Mean Carcass Yield 77.17 %
Mean HPT at Day 07 0.89221 ng/ml
Mean HPT at Day 21 0.61203 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 3.749 ng/L
Mean LPS at Day 21 4.1142 ng/L
Mean LPS at Day 35 6.9082 ng/L
Mean Legs Yield 19.25 %
Mean Legs weight 453.4 g
Mean TBARS 0.0533 mg MDA/kg
Mean carcass body weight 2355.8 g
Mean feather cortisol at Day 07 10.562 pg/mg
Mean feather cortisol at Day 21 12.017 pg/mg
Mean feather cortisol at Day 35 15.812 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA19 None

Sample metadata

Marker Measurement Units
Animal code CA19.15 None
Breed Ross None
C-Reactive protein 0.61 pg/ml
Chicken body weight 2013.4 g
Feather cortisol 17.38 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 49.45 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None