HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309189

Details for MGYG000309189, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coprocola pullicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Coprocola > Coprocola pullicola
Cluster representative

MGYG000310311

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310311 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309189’s cluster representative genome MGYG000310311 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310311 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309189 Copy API Endpoint
Samples containing this genome

MGYG000309189’s cluster representative (MGYG000310311) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310311’s sequence. Because MGYG000309189 has been clustered with MGYG000310311 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309189.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310311

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.91 SAMEA7697631 Prebiotic
0.91 SAMEA7025267 Control
0.91 SAMEA10104999 Control
0.91 SAMEA10454447 Prebiotic
0.91 SAMEA9449835 Probiotic
0.91 SAMEA10455487 Control
0.91 SAMEA7571780 Control
0.91 SAMEA7025243 Prebiotic
0.91 SAMEA10159248 Prebiotic
0.91 SAMEA9449960 Control