HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905242: a HoloFood chicken host

Data available for SAMEA112905242


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905242 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905242, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 23.82 g
Average Daily Feed intake: Day 00 - 35 83.18 g
Average Daily Feed intake: Day 07 - 21 73.65 g
Average Daily Feed intake: Day 21 - 35 126.12 g
Average Daily Gain: Day 00 - 07 22.67 g
Average Daily Gain: Day 00 - 35 56.87 g
Average Daily Gain: Day 07 - 21 56.11 g
Average Daily Gain: Day 21 - 35 74.74 g
Average European Performance Efficiency Factor: Day 00 - 07 215.72 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.313 None
Average Feed to Conversion Ratio: Day 07 - 21 1.313 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 47.42 g
Average body weight at day 07 206.11 g
Average body weight at day 21 991.67 g
Average body weight at day 35 2038 g
European Performance Efficiency Factor: Day 00 - 35 388.87 None
European Performance Efficiency Factor: Day 07 - 21 427.49 None
European Performance Efficiency Factor: Day 21 - 35 442.9 None
FCR (not corrected): Day 00 - 07 1.051 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.463 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.687 None
Feed to Conversion Ratio: Day 00 - 07 1.051 g/g
Feed to Conversion Ratio: Day 00 - 35 1.463 g/g
Feed to Conversion Ratio: Day 21 - 35 1.687 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=88.89 P1=11.11 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=9.52 P1=14.29 P2=28.57 P3=47.62 P4=0.00 %
Litter at Day 07 5.89 pH
Litter at Day 21 6.61 pH
Litter at Day 35 8.49 pH
Mean Abdominal fat Yield 1.38 %
Mean Abdominal fat weight 29.82 g
Mean Breast Yield 18.08 %
Mean Breast weight 384.53 g
Mean CRP at Day 07 2.0559 pg/mg
Mean CRP at Day 21 3.063 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1635.6 g
Mean Carcass Yield 77.42 %
Mean HPT at Day 07 1.1095 ng/ml
Mean HPT at Day 21 0.69188 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 6.3702 ng/L
Mean LPS at Day 21 4.5252 ng/L
Mean LPS at Day 35 6.0896 ng/L
Mean Legs Yield 21.28 %
Mean Legs weight 448.2 g
Mean TBARS 0.0467 mg MDA/kg
Mean carcass body weight 2116.7 g
Mean feather cortisol at Day 07 6.605 pg/mg
Mean feather cortisol at Day 21 14.052 pg/mg
Mean feather cortisol at Day 35 22.08 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC17 None

Sample metadata

Marker Measurement Units
Animal code CC17.01 None
Breed Cobb None
C-Reactive protein 4.02 pg/ml
Chicken body weight 166.9 g
Feather cortisol 6.79 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 47.25 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None