HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904998: a HoloFood chicken host

Data available for SAMEA112904998


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
View 5 derived samples
API endpoint
/api/animals/SAMEA112904998 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904998, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.74 g
Average Daily Feed intake: Day 00 - 35 91.09 g
Average Daily Feed intake: Day 07 - 21 62.58 g
Average Daily Feed intake: Day 21 - 35 160.49 g
Average Daily Gain: Day 00 - 07 18.33 g
Average Daily Gain: Day 00 - 35 58.22 g
Average Daily Gain: Day 07 - 21 51.05 g
Average Daily Gain: Day 21 - 35 85.35 g
Average European Performance Efficiency Factor: Day 00 - 07 170.16 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.226 None
Average Feed to Conversion Ratio: Day 07 - 21 1.226 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.73 g
Average body weight at day 07 171.03 g
Average body weight at day 21 885.71 g
Average body weight at day 35 2080.6 g
European Performance Efficiency Factor: Day 00 - 35 372.18 None
European Performance Efficiency Factor: Day 07 - 21 416.45 None
European Performance Efficiency Factor: Day 21 - 35 453.87 None
FCR (not corrected): Day 00 - 07 1.077 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.564 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.88 None
Feed to Conversion Ratio: Day 00 - 07 1.077 g/g
Feed to Conversion Ratio: Day 00 - 35 1.564 g/g
Feed to Conversion Ratio: Day 21 - 35 1.88 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=83.33 P1=16.67 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=54.17 P1=29.17 P2=16.67 P3=0.00 P4=0.00 %
Litter at Day 07 6.08 pH
Litter at Day 21 7.54 pH
Litter at Day 35 6.89 pH
Mean Abdominal fat Yield 1.58 %
Mean Abdominal fat weight 36.6 g
Mean Breast Yield 21.24 %
Mean Breast weight 498.1 g
Mean CRP at Day 07 1.8972 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1812.5 g
Mean Carcass Yield 77.38 %
Mean HPT at Day 07 0.83619 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.63706 ng/ml
Mean LPS at Day 07 3.0898 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.8026 ng/L
Mean Legs Yield 19.56 %
Mean Legs weight 458.4 g
Mean TBARS 0.0633 mg MDA/kg
Mean carcass body weight 2343 g
Mean feather cortisol at Day 07 9.0433 pg/mg
Mean feather cortisol at Day 21 7.2683 pg/mg
Mean feather cortisol at Day 35 8.375 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA03 None

Sample metadata

Marker Measurement Units
Animal code CA03.03 None
Breed Cobb None
C-Reactive protein 1.34 pg/ml
Chicken body weight 157.4 g
Feather cortisol 7.48 pg/mg
Haptoglobin 40.81 ng/ml
Lipopolysaccharide 5.61 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None