MGYG000308908

Taxonomy

RUG14156 Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > RUG14156

Cluster representative

MGYG000317141

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317141 on MGnify
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Annotations

MGYG000308908’s cluster representative genome MGYG000317141 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317141 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308908 Copy API Endpoint

MGYG000308908’s cluster representative (MGYG000317141) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317141’s sequence. Because MGYG000308908 has been clustered with MGYG000317141 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308908.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317141

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449926	SAMEA112904943	Prebiotic
0.99	SAMEA9449846	SAMEA112905166	Prebiotic
0.99	SAMEA7571794	SAMEA112904960	Prebiotic
0.99	SAMEA7025262	SAMEA112905328	Control
0.99	SAMEA10145560	SAMEA112904810	Control
0.98	SAMEA14099424	SAMEA112905085	Prebiotic
0.98	SAMEA7697584	SAMEA112904877	Control
0.98	SAMEA10104961	SAMEA112904891	Probiotic
0.98	SAMEA10159263	SAMEA112905109	Prebiotic
0.98	SAMEA10159267	SAMEA112905062	Control