HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904877: a HoloFood chicken host

Data available for SAMEA112904877


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 12 derived samples
API endpoint
/api/animals/SAMEA112904877 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904877, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 18.59 g
Average Daily Feed intake: Day 00 - 35 97.92 g
Average Daily Feed intake: Day 07 - 21 65.53 g
Average Daily Feed intake: Day 21 - 35 175.57 g
Average Daily Gain: Day 00 - 07 17.59 g
Average Daily Gain: Day 00 - 35 60.2 g
Average Daily Gain: Day 07 - 21 48.76 g
Average Daily Gain: Day 21 - 35 92.93 g
Average European Performance Efficiency Factor: Day 00 - 07 162.35 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.358 None
Average Feed to Conversion Ratio: Day 07 - 21 1.344 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 40.46 g
Average body weight at day 07 163.62 g
Average body weight at day 21 846.31 g
Average body weight at day 35 2147.3 g
European Performance Efficiency Factor: Day 00 - 35 351.56 None
European Performance Efficiency Factor: Day 07 - 21 353.59 None
European Performance Efficiency Factor: Day 21 - 35 491.86 None
FCR (not corrected): Day 00 - 07 1.071 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.634 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.889 None
Feed to Conversion Ratio: Day 00 - 07 1.057 g/g
Feed to Conversion Ratio: Day 00 - 35 1.627 g/g
Feed to Conversion Ratio: Day 21 - 35 1.889 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=70.97 P1=29.03 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=66.67 P1=25.00 P2=8.33 P3=0.00 P4=0.00 %
Litter at Day 07 6.28 pH
Litter at Day 21 8.17 pH
Litter at Day 35 7.29 pH
Mean Abdominal fat Yield 1.28 %
Mean Abdominal fat weight 29.78 g
Mean Breast Yield 19.22 %
Mean Breast weight 447.47 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.1189 pg/mg
Mean Carcass Weight 1791.6 g
Mean Carcass Yield 77.12 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.71489 ng/ml
Mean HPT at Day 35 0.88312 ng/ml
Mean LPS at Day 07 2.9732 ng/L
Mean LPS at Day 21 4.1086 ng/L
Mean LPS at Day 35 7.0371 ng/L
Mean Legs Yield 21.2 %
Mean Legs weight 492.47 g
Mean TBARS 0.07 mg MDA/kg
Mean carcass body weight 2321.2 g
Mean feather cortisol at Day 07 18.002 pg/mg
Mean feather cortisol at Day 21 16.432 pg/mg
Mean feather cortisol at Day 35 18.168 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 2.56 %
Mortality: Day 21 - 35 0 %
Pen code CA23 None

Sample metadata

Marker Measurement Units
Animal code CA23.15 None
Breed Ross None
C-Reactive protein 0.74 pg/ml
Chicken body weight 1986.2 g
Feather cortisol 16.54 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 47.85 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None