HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905328: a HoloFood chicken host

Data available for SAMEA112905328


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905328 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905328, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.22 g
Average Daily Feed intake: Day 00 - 35 84.33 g
Average Daily Feed intake: Day 07 - 21 70.89 g
Average Daily Feed intake: Day 21 - 35 132.84 g
Average Daily Gain: Day 00 - 07 18.84 g
Average Daily Gain: Day 00 - 35 55.32 g
Average Daily Gain: Day 07 - 21 49.32 g
Average Daily Gain: Day 21 - 35 79.58 g
Average European Performance Efficiency Factor: Day 00 - 07 171.13 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.462 None
Average Feed to Conversion Ratio: Day 07 - 21 1.438 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 38.64 g
Average body weight at day 07 170.51 g
Average body weight at day 21 860.94 g
Average body weight at day 35 1975 g
European Performance Efficiency Factor: Day 00 - 35 344.82 None
European Performance Efficiency Factor: Day 07 - 21 334.26 None
European Performance Efficiency Factor: Day 21 - 35 476.68 None
FCR (not corrected): Day 00 - 07 1.079 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.535 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.669 None
Feed to Conversion Ratio: Day 00 - 07 1.073 g/g
Feed to Conversion Ratio: Day 00 - 35 1.524 g/g
Feed to Conversion Ratio: Day 21 - 35 1.669 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=92.31 P1=7.69 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 7.36 pH
Litter at Day 21 5.75 pH
Litter at Day 35 6.19 pH
Mean Abdominal fat Yield 1.3 %
Mean Abdominal fat weight 28.12 g
Mean Breast Yield 19.65 %
Mean Breast weight 423.27 g
Mean CRP at Day 07 1.2539 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0934 pg/mg
Mean Carcass Weight 1632.7 g
Mean Carcass Yield 76.05 %
Mean HPT at Day 07 0.98021 ng/ml
Mean HPT at Day 21 0.84714 ng/ml
Mean HPT at Day 35 0.90874 ng/ml
Mean LPS at Day 07 6.9515 ng/L
Mean LPS at Day 21 4.4739 ng/L
Mean LPS at Day 35 4.6073 ng/L
Mean Legs Yield 19.85 %
Mean Legs weight 424.5 g
Mean TBARS 0.1167 mg MDA/kg
Mean carcass body weight 2146.7 g
Mean feather cortisol at Day 07 10.845 pg/mg
Mean feather cortisol at Day 21 6.95 pg/mg
Mean feather cortisol at Day 35 8.0833 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 2.56 %
Mortality: Day 21 - 35 0 %
Pen code CB10 None

Sample metadata

Marker Measurement Units
Animal code CB10.16 None
Breed Ross None
C-Reactive protein 0.5 pg/ml
Chicken body weight 2059.6 g
Feather cortisol 9.82 pg/mg
Haptoglobin 13.78 ng/ml
Lipopolysaccharide 46.12 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None