MGYG000308644

Taxonomy

Limosilactobacillus vaginalis Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Limosilactobacillus > Limosilactobacillus vaginalis

Cluster representative

MGYG000317570

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317570 on MGnify
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Annotations

MGYG000308644’s cluster representative genome MGYG000317570 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317570 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308644 Copy API Endpoint

MGYG000308644’s cluster representative (MGYG000317570) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317570’s sequence. Because MGYG000308644 has been clustered with MGYG000317570 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308644.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317570

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697589	SAMEA112905374	Control
1.00	SAMEA10158029	SAMEA112905374	Control
1.00	SAMEA7025259	SAMEA112905304	Prebiotic
1.00	SAMEA10158026	SAMEA112905254	Control
0.99	SAMEA10104995	SAMEA112904969	Prebiotic
0.99	SAMEA7817176	SAMEA112905328	Control
0.99	SAMEA10455491	SAMEA112905383	Probiotic
0.98	SAMEA7368184	SAMEA112905304	Prebiotic
0.97	SAMEA10130029	SAMEA112905369	Prebiotic
0.96	SAMEA7025263	SAMEA112905147	Control