HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905147: a HoloFood chicken host

Data available for SAMEA112905147


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
View 2 derived samples
API endpoint
/api/animals/SAMEA112905147 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905147, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.71 g
Average Daily Feed intake: Day 00 - 35 89.47 g
Average Daily Feed intake: Day 07 - 21 72.22 g
Average Daily Feed intake: Day 21 - 35 144.19 g
Average Daily Gain: Day 00 - 07 19.62 g
Average Daily Gain: Day 00 - 35 57.73 g
Average Daily Gain: Day 07 - 21 52.16 g
Average Daily Gain: Day 21 - 35 82.36 g
Average European Performance Efficiency Factor: Day 00 - 07 173 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.385 None
Average Feed to Conversion Ratio: Day 07 - 21 1.385 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.96 g
Average body weight at day 07 183.33 g
Average body weight at day 21 913.64 g
Average body weight at day 35 2066.7 g
European Performance Efficiency Factor: Day 00 - 35 363.23 None
European Performance Efficiency Factor: Day 07 - 21 376.77 None
European Performance Efficiency Factor: Day 21 - 35 470.42 None
FCR (not corrected): Day 00 - 07 1.115 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.551 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.751 None
Feed to Conversion Ratio: Day 00 - 07 1.106 g/g
Feed to Conversion Ratio: Day 00 - 35 1.55 g/g
Feed to Conversion Ratio: Day 21 - 35 1.751 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=90.91 P1=9.09 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.82 pH
Litter at Day 21 5.94 pH
Litter at Day 35 8.3 pH
Mean Abdominal fat Yield 1.79 %
Mean Abdominal fat weight 43.15 g
Mean Breast Yield 20.71 %
Mean Breast weight 504.55 g
Mean CRP at Day 07 1.6523 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1841.5 g
Mean Carcass Yield 75.83 %
Mean HPT at Day 07 1.1972 ng/ml
Mean HPT at Day 21 0.96899 ng/ml
Mean HPT at Day 35 0.72092 ng/ml
Mean LPS at Day 07 7.0653 ng/L
Mean LPS at Day 21 4.4562 ng/L
Mean LPS at Day 35 5.669 ng/L
Mean Legs Yield 19.2 %
Mean Legs weight 466.62 g
Mean TBARS 0.0933 mg MDA/kg
Mean carcass body weight 2426.7 g
Mean feather cortisol at Day 07 8.67 pg/mg
Mean feather cortisol at Day 21 13.766 pg/mg
Mean feather cortisol at Day 35 32.6 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB13 None

Sample metadata

Marker Measurement Units
Animal code CB13.05 None
Breed Cobb None
C-Reactive protein 2.46 pg/ml
Chicken body weight 241.5 g
Feather cortisol 5.77 pg/mg
Haptoglobin 149.13 ng/ml
Lipopolysaccharide 47.87 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None