HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308598

Details for MGYG000308598, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Neoanaerotignum_A tabaqchaliae Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Anaerotignaceae > Neoanaerotignum_A > Neoanaerotignum_A tabaqchaliae
Cluster representative

MGYG000319095

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319095 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308598’s cluster representative genome MGYG000319095 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319095 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308598 Copy API Endpoint
Samples containing this genome

MGYG000308598’s cluster representative (MGYG000319095) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319095’s sequence. Because MGYG000308598 has been clustered with MGYG000319095 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308598.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319095

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Containment Sample accession Animal accession Treatment
0.89 SAMEA7025267 Control
0.89 SAMEA7025248 Probiotic
0.88 SAMEA7025266 Probiotic
0.88 SAMEA7025278 Prebiotic
0.87 SAMEA7025252 Prebiotic
0.87 SAMEA7025263 Control
0.87 SAMEA7025261 Probiotic
0.86 SAMEA10104996 Prebiotic
0.85 SAMEA9449859 Probiotic
0.85 SAMEA7025234 Control