HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308534

Details for MGYG000308534, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Egerieimonas_A faecigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Egerieimonas_A > Egerieimonas_A faecigallinarum
Cluster representative

MGYG000312233

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312233 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308534’s cluster representative genome MGYG000312233 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312233 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308534 Copy API Endpoint
Samples containing this genome

MGYG000308534’s cluster representative (MGYG000312233) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312233’s sequence. Because MGYG000308534 has been clustered with MGYG000312233 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308534.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312233

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025267 Control
0.99 SAMEA7025259 Prebiotic
0.99 SAMEA9449921 Control
0.94 SAMEA10159244 Probiotic
0.91 SAMEA7697606 Control
0.86 SAMEA10104961 Probiotic
0.86 SAMEA10105026 Control
0.86 SAMEA7025244 Probiotic
0.86 SAMEA7025263 Control
0.85 SAMEA7697598 Control