HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905315: a HoloFood chicken host

Data available for SAMEA112905315


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905315 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905315, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.59 g
Average Daily Feed intake: Day 00 - 35 76.62 g
Average Daily Feed intake: Day 07 - 21 76.4 g
Average Daily Feed intake: Day 21 - 35 105.9 g
Average Daily Gain: Day 00 - 07 20.97 g
Average Daily Gain: Day 00 - 35 46.98 g
Average Daily Gain: Day 07 - 21 43.79 g
Average Daily Gain: Day 21 - 35 63.18 g
Average European Performance Efficiency Factor: Day 00 - 07 198.61 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.745 None
Average Feed to Conversion Ratio: Day 07 - 21 1.745 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.14 g
Average body weight at day 07 191.94 g
Average body weight at day 21 805 g
Average body weight at day 35 1689.6 g
European Performance Efficiency Factor: Day 00 - 35 273.69 None
European Performance Efficiency Factor: Day 07 - 21 251 None
European Performance Efficiency Factor: Day 21 - 35 364.42 None
FCR (not corrected): Day 00 - 07 1.037 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.656 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.728 None
Feed to Conversion Ratio: Day 00 - 07 1.03 g/g
Feed to Conversion Ratio: Day 00 - 35 1.631 g/g
Feed to Conversion Ratio: Day 21 - 35 1.676 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 6.19 pH
Litter at Day 21 7.09 pH
Litter at Day 35 7.13 pH
Mean Abdominal fat Yield 1.14 %
Mean Abdominal fat weight 22.75 g
Mean Breast Yield 15.62 %
Mean Breast weight 307.62 g
Mean CRP at Day 07 1.7984 pg/mg
Mean CRP at Day 21 2.1351 pg/mg
Mean CRP at Day 35 1.204 pg/mg
Mean Carcass Weight 1469.2 g
Mean Carcass Yield 75.18 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.69813 ng/ml
Mean HPT at Day 35 0.6383 ng/ml
Mean LPS at Day 07 4.4653 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.7147 ng/L
Mean Legs Yield 21.76 %
Mean Legs weight 423.68 g
Mean TBARS 0.06 mg MDA/kg
Mean carcass body weight 1950 g
Mean feather cortisol at Day 07 9.1283 pg/mg
Mean feather cortisol at Day 21 9.7717 pg/mg
Mean feather cortisol at Day 35 8.665 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 2.5 %
Mortality without culleds: Day 21 - 35 3.33 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 3.33 %
Pen code CC08 None

Sample metadata

Marker Measurement Units
Animal code CC08.02 None
Breed Ross None
C-Reactive protein 3.87 pg/ml
Chicken body weight 147.9 g
Feather cortisol 4.83 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 19.09 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None