HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308459

Details for MGYG000308459, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterococcus_D gallinarum Bacteria > Firmicutes > Bacilli > Lactobacillales > Enterococcaceae > Enterococcus_D > Enterococcus_D gallinarum
Cluster representative

MGYG000308334

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308334 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308459’s cluster representative genome MGYG000308334 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308334 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308459 Copy API Endpoint
Samples containing this genome

MGYG000308459’s cluster representative (MGYG000308334) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308334’s sequence. Because MGYG000308459 has been clustered with MGYG000308334 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308459.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308334

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Containment Sample accession Animal accession Treatment
0.85 SAMEA7025243 Prebiotic
0.67 SAMEA10105000 Control
0.53 SAMEA10104983 Control
0.47 SAMEA10158026 Control
0.42 SAMEA10455476 Probiotic
0.36 SAMEA10145592 Control
0.35 SAMEA7571766 Control
0.34 SAMEA7697598 Control
0.32 SAMEA14095990 Prebiotic
0.31 SAMEA10454438 Probiotic