MGYG000308459

Taxonomy

Enterococcus_D gallinarum Bacteria > Firmicutes > Bacilli > Lactobacillales > Enterococcaceae > Enterococcus_D > Enterococcus_D gallinarum

Cluster representative

MGYG000308334

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308334 on MGnify
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Annotations

MGYG000308459’s cluster representative genome MGYG000308334 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308334 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308459 Copy API Endpoint

MGYG000308459’s cluster representative (MGYG000308334) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308334’s sequence. Because MGYG000308459 has been clustered with MGYG000308334 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308459.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308334

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA10105036	SAMEA112905300	Probiotic
0.21	SAMEA10104954	SAMEA112905000	Control
0.20	SAMEA9449922	SAMEA112904890	Control