HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904850: a HoloFood chicken host

Data available for SAMEA112904850


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904850 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904850, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.64 g
Average Daily Feed intake: Day 00 - 35 95.12 g
Average Daily Feed intake: Day 07 - 21 78.11 g
Average Daily Feed intake: Day 21 - 35 154.98 g
Average Daily Gain: Day 00 - 07 19.36 g
Average Daily Gain: Day 00 - 35 61.61 g
Average Daily Gain: Day 07 - 21 56.32 g
Average Daily Gain: Day 21 - 35 88.02 g
Average European Performance Efficiency Factor: Day 00 - 07 181.53 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.395 None
Average Feed to Conversion Ratio: Day 07 - 21 1.387 g/g
Average Mortality without culleds: Day 07 - 21 2.5 %
Average body weight at day 00 45.75 g
Average body weight at day 07 181.25 g
Average body weight at day 21 969.7 g
Average body weight at day 35 2202 g
European Performance Efficiency Factor: Day 00 - 35 369.08 None
European Performance Efficiency Factor: Day 07 - 21 395.91 None
European Performance Efficiency Factor: Day 21 - 35 469.63 None
FCR (not corrected): Day 00 - 07 1.066 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.589 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.859 None
Feed to Conversion Ratio: Day 00 - 07 1.066 g/g
Feed to Conversion Ratio: Day 00 - 35 1.544 g/g
Feed to Conversion Ratio: Day 21 - 35 1.761 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=93.94 P1=6.06 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=55.56 P1=25.93 P2=14.81 P3=3.70 P4=0.00 %
Litter at Day 07 5.8 pH
Litter at Day 21 7.86 pH
Litter at Day 35 8.27 pH
Mean Abdominal fat Yield 1.57 %
Mean Abdominal fat weight 40.97 g
Mean Breast Yield 20.32 %
Mean Breast weight 519.02 g
Mean CRP at Day 07 2.2296 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1944.1 g
Mean Carcass Yield 76.65 %
Mean HPT at Day 07 0.88776 ng/ml
Mean HPT at Day 21 0.84446 ng/ml
Mean HPT at Day 35 0.69347 ng/ml
Mean LPS at Day 07 6.7536 ng/L
Mean LPS at Day 21 4.6572 ng/L
Mean LPS at Day 35 5.7167 ng/L
Mean Legs Yield 19.66 %
Mean Legs weight 498.93 g
Mean TBARS 0.07 mg MDA/kg
Mean carcass body weight 2532.5 g
Mean feather cortisol at Day 07 7.9567 pg/mg
Mean feather cortisol at Day 21 14.538 pg/mg
Mean feather cortisol at Day 35 19.165 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 7.5 %
Mortality without culleds: Day 21 - 35 6.06 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 7.5 %
Mortality: Day 07 - 21 2.5 %
Mortality: Day 21 - 35 6.06 %
Pen code CB17 None

Sample metadata

Marker Measurement Units
Animal code CB17.07 None
Breed Cobb None
C-Reactive protein 0 pg/ml
Chicken body weight 609.7 g
Feather cortisol 14.49 pg/mg
Haptoglobin 43.96 ng/ml
Lipopolysaccharide 39.48 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None