HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905014: a HoloFood chicken host

Data available for SAMEA112905014


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112905014 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905014, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 18.4 g
Average Daily Feed intake: Day 00 - 35 95.51 g
Average Daily Feed intake: Day 07 - 21 64.4 g
Average Daily Feed intake: Day 21 - 35 170.51 g
Average Daily Gain: Day 00 - 07 16.81 g
Average Daily Gain: Day 00 - 35 58.89 g
Average Daily Gain: Day 07 - 21 47.98 g
Average Daily Gain: Day 21 - 35 90.84 g
Average European Performance Efficiency Factor: Day 00 - 07 149.63 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.361 None
Average Feed to Conversion Ratio: Day 07 - 21 1.342 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 38.83 g
Average body weight at day 07 156.46 g
Average body weight at day 21 828.19 g
Average body weight at day 35 2099.9 g
European Performance Efficiency Factor: Day 00 - 35 344.92 None
European Performance Efficiency Factor: Day 07 - 21 348.3 None
European Performance Efficiency Factor: Day 21 - 35 483.92 None
FCR (not corrected): Day 00 - 07 1.105 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.631 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.877 None
Feed to Conversion Ratio: Day 00 - 07 1.095 g/g
Feed to Conversion Ratio: Day 00 - 35 1.622 g/g
Feed to Conversion Ratio: Day 21 - 35 1.877 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=90.32 P1=9.68 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=75.00 P1=20.83 P2=4.17 P3=0.00 P4=0.00 %
Litter at Day 07 7.09 pH
Litter at Day 21 7.85 pH
Litter at Day 35 7.87 pH
Mean Abdominal fat Yield 1.28 %
Mean Abdominal fat weight 29.83 g
Mean Breast Yield 17.88 %
Mean Breast weight 416.4 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0959 pg/mg
Mean CRP at Day 35 1.124 pg/mg
Mean Carcass Weight 1756 g
Mean Carcass Yield 75.49 %
Mean HPT at Day 07 1.1234 ng/ml
Mean HPT at Day 21 0.78958 ng/ml
Mean HPT at Day 35 0.63245 ng/ml
Mean LPS at Day 07 3.8422 ng/L
Mean LPS at Day 21 4.0706 ng/L
Mean LPS at Day 35 6.6412 ng/L
Mean Legs Yield 20.99 %
Mean Legs weight 487.83 g
Mean TBARS 0.0467 mg MDA/kg
Mean carcass body weight 2324.7 g
Mean feather cortisol at Day 07 18.98 pg/mg
Mean feather cortisol at Day 21 12.028 pg/mg
Mean feather cortisol at Day 35 17.068 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 2.56 %
Mortality: Day 21 - 35 0 %
Pen code CA21 None

Sample metadata

Marker Measurement Units
Animal code CA21.01 None
Breed Ross None
C-Reactive protein 0.5 pg/ml
Chicken body weight 219.2 g
Feather cortisol 13.81 pg/mg
Haptoglobin 108.15 ng/ml
Lipopolysaccharide 12.71 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None