MGYG000308385

Taxonomy

Gallispira edinburgensis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > CAG-274 > Gallispira > Gallispira edinburgensis

Cluster representative

MGYG000318258

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318258 on MGnify
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Annotations

MGYG000308385’s cluster representative genome MGYG000318258 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318258 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308385 Copy API Endpoint

MGYG000308385’s cluster representative (MGYG000318258) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318258’s sequence. Because MGYG000308385 has been clustered with MGYG000318258 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308385.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318258

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697588	SAMEA112905360	Probiotic
1.00	SAMEA7025263	SAMEA112905147	Control
1.00	SAMEA10158026	SAMEA112905254	Control
0.99	SAMEA7025259	SAMEA112905304	Prebiotic
0.99	SAMEA9449922	SAMEA112904890	Control
0.99	SAMEA9449945	SAMEA112904907	Prebiotic
0.99	SAMEA7571791	SAMEA112904934	Control
0.99	SAMEA10104979	SAMEA112905042	Probiotic
0.99	SAMEA10105036	SAMEA112905300	Probiotic
0.99	SAMEA7571802	SAMEA112905125	Control