HoloFood Data Portal

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SAMEA112904890: a HoloFood chicken host

Data available for SAMEA112904890


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 5 derived samples
API endpoint
/api/animals/SAMEA112904890 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904890, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.56 g
Average Daily Feed intake: Day 00 - 35 92.4 g
Average Daily Feed intake: Day 07 - 21 82.07 g
Average Daily Feed intake: Day 21 - 35 142.66 g
Average Daily Gain: Day 00 - 07 20.89 g
Average Daily Gain: Day 00 - 35 60.97 g
Average Daily Gain: Day 07 - 21 55.76 g
Average Daily Gain: Day 21 - 35 86.21 g
Average European Performance Efficiency Factor: Day 00 - 07 212.13 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.472 None
Average Feed to Conversion Ratio: Day 07 - 21 1.472 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.77 g
Average body weight at day 07 190.97 g
Average body weight at day 21 971.67 g
Average body weight at day 35 2178.6 g
European Performance Efficiency Factor: Day 00 - 35 381.64 None
European Performance Efficiency Factor: Day 07 - 21 378.9 None
European Performance Efficiency Factor: Day 21 - 35 486.2 None
FCR (not corrected): Day 00 - 07 0.985 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.568 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.776 None
Feed to Conversion Ratio: Day 00 - 07 0.985 g/g
Feed to Conversion Ratio: Day 00 - 35 1.516 g/g
Feed to Conversion Ratio: Day 21 - 35 1.655 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=57.89 P1=21.05 P2=21.05 P3=0.00 P4=0.00 %
Litter at Day 07 5.88 pH
Litter at Day 21 6.33 pH
Litter at Day 35 8.17 pH
Mean Abdominal fat Yield 1.65 %
Mean Abdominal fat weight 38.63 g
Mean Breast Yield 19.21 %
Mean Breast weight 452.58 g
Mean CRP at Day 07 2.1393 pg/mg
Mean CRP at Day 21 1.4298 pg/mg
Mean CRP at Day 35 1.1313 pg/mg
Mean Carcass Weight 1838.2 g
Mean Carcass Yield 78.87 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.66025 ng/ml
Mean HPT at Day 35 0.99976 ng/ml
Mean LPS at Day 07 4.2641 ng/L
Mean LPS at Day 21 6.5485 ng/L
Mean LPS at Day 35 2.9732 ng/L
Mean Legs Yield 21.09 %
Mean Legs weight 488.88 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 2333.3 g
Mean feather cortisol at Day 07 5.9017 pg/mg
Mean feather cortisol at Day 21 11.838 pg/mg
Mean feather cortisol at Day 35 32.057 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5.13 %
Mortality without culleds: Day 21 - 35 6.67 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 5.13 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 6.67 %
Pen code CC03 None

Sample metadata

Marker Measurement Units
Animal code CC03.06 None
Breed Cobb None
C-Reactive protein 3.69 pg/ml
Chicken body weight 159.5 g
Feather cortisol 3.74 pg/mg
Haptoglobin 5.32 ng/ml
Lipopolysaccharide 17.22 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None