HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904934: a HoloFood chicken host

Data available for SAMEA112904934


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 5 derived samples
API endpoint
/api/animals/SAMEA112904934 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904934, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 18.59 g
Average Daily Feed intake: Day 00 - 35 97.92 g
Average Daily Feed intake: Day 07 - 21 65.53 g
Average Daily Feed intake: Day 21 - 35 175.57 g
Average Daily Gain: Day 00 - 07 17.59 g
Average Daily Gain: Day 00 - 35 60.2 g
Average Daily Gain: Day 07 - 21 48.76 g
Average Daily Gain: Day 21 - 35 92.93 g
Average European Performance Efficiency Factor: Day 00 - 07 162.35 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.358 None
Average Feed to Conversion Ratio: Day 07 - 21 1.344 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 40.46 g
Average body weight at day 07 163.62 g
Average body weight at day 21 846.31 g
Average body weight at day 35 2147.3 g
European Performance Efficiency Factor: Day 00 - 35 351.56 None
European Performance Efficiency Factor: Day 07 - 21 353.59 None
European Performance Efficiency Factor: Day 21 - 35 491.86 None
FCR (not corrected): Day 00 - 07 1.071 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.634 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.889 None
Feed to Conversion Ratio: Day 00 - 07 1.057 g/g
Feed to Conversion Ratio: Day 00 - 35 1.627 g/g
Feed to Conversion Ratio: Day 21 - 35 1.889 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=70.97 P1=29.03 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=66.67 P1=25.00 P2=8.33 P3=0.00 P4=0.00 %
Litter at Day 07 6.28 pH
Litter at Day 21 8.17 pH
Litter at Day 35 7.29 pH
Mean Abdominal fat Yield 1.28 %
Mean Abdominal fat weight 29.78 g
Mean Breast Yield 19.22 %
Mean Breast weight 447.47 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.1189 pg/mg
Mean Carcass Weight 1791.6 g
Mean Carcass Yield 77.12 %
Mean HPT at Day 07 0.59161 ng/ml
Mean HPT at Day 21 0.71489 ng/ml
Mean HPT at Day 35 0.88312 ng/ml
Mean LPS at Day 07 2.9732 ng/L
Mean LPS at Day 21 4.1086 ng/L
Mean LPS at Day 35 7.0371 ng/L
Mean Legs Yield 21.2 %
Mean Legs weight 492.47 g
Mean TBARS 0.07 mg MDA/kg
Mean carcass body weight 2321.2 g
Mean feather cortisol at Day 07 18.002 pg/mg
Mean feather cortisol at Day 21 16.432 pg/mg
Mean feather cortisol at Day 35 18.168 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 2.56 %
Mortality: Day 21 - 35 0 %
Pen code CA23 None

Sample metadata

Marker Measurement Units
Animal code CA23.01 None
Breed Ross None
C-Reactive protein 0 pg/ml
Chicken body weight 194.6 g
Feather cortisol 11.04 pg/mg
Haptoglobin 33.68 ng/ml
Lipopolysaccharide 9.44 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None