HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905300: a HoloFood chicken host

Data available for SAMEA112905300


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905300 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905300, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.23 g
Average Daily Feed intake: Day 00 - 35 86.1 g
Average Daily Feed intake: Day 07 - 21 74.12 g
Average Daily Feed intake: Day 21 - 35 133.94 g
Average Daily Gain: Day 00 - 07 21.87 g
Average Daily Gain: Day 00 - 35 60.41 g
Average Daily Gain: Day 07 - 21 56.25 g
Average Daily Gain: Day 21 - 35 83.84 g
Average European Performance Efficiency Factor: Day 00 - 07 225.3 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.318 None
Average Feed to Conversion Ratio: Day 07 - 21 1.318 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.26 g
Average body weight at day 07 196.35 g
Average body weight at day 21 983.87 g
Average body weight at day 35 2157.7 g
European Performance Efficiency Factor: Day 00 - 35 423.88 None
European Performance Efficiency Factor: Day 07 - 21 426.92 None
European Performance Efficiency Factor: Day 21 - 35 524.86 None
FCR (not corrected): Day 00 - 07 0.971 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.425 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.597 None
Feed to Conversion Ratio: Day 00 - 07 0.971 g/g
Feed to Conversion Ratio: Day 00 - 35 1.425 g/g
Feed to Conversion Ratio: Day 21 - 35 1.597 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=92.86 P1=7.14 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=72.73 P1=13.64 P2=9.09 P3=4.55 P4=0.00 %
Litter at Day 07 5.92 pH
Litter at Day 21 8.45 pH
Litter at Day 35 8.37 pH
Mean Abdominal fat Yield 1.59 %
Mean Abdominal fat weight 37.62 g
Mean Breast Yield 18.11 %
Mean Breast weight 424.43 g
Mean CRP at Day 07 2.2565 pg/mg
Mean CRP at Day 21 2.1573 pg/mg
Mean CRP at Day 35 1.1083 pg/mg
Mean Carcass Weight 1805.5 g
Mean Carcass Yield 77.21 %
Mean HPT at Day 07 0.84348 ng/ml
Mean HPT at Day 21 0.62424 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 5.6677 ng/L
Mean LPS at Day 21 3.7996 ng/L
Mean LPS at Day 35 5.9555 ng/L
Mean Legs Yield 21.52 %
Mean Legs weight 502.63 g
Mean TBARS 0.04 mg MDA/kg
Mean carcass body weight 2341.7 g
Mean feather cortisol at Day 07 7.1267 pg/mg
Mean feather cortisol at Day 21 13.35 pg/mg
Mean feather cortisol at Day 35 27.012 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC15 None

Sample metadata

Marker Measurement Units
Animal code CC15.05 None
Breed Cobb None
C-Reactive protein 5.06 pg/ml
Chicken body weight 205.6 g
Feather cortisol 6.19 pg/mg
Haptoglobin 81.43 ng/ml
Lipopolysaccharide 43.77 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None