HoloFood Data Portal

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MGYG000320870

Details for MGYG000320870, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A > Blautia_A avistercoris
Cluster representative

MGYG000318222

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318222 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320870’s cluster representative genome MGYG000318222 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318222 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320870 Copy API Endpoint
Samples containing this genome

MGYG000320870’s cluster representative (MGYG000318222) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318222’s sequence. Because MGYG000320870 has been clustered with MGYG000318222 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320870.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318222

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Containment Sample accession Animal accession Treatment
0.97 SAMEA10104922 Prebiotic
0.97 SAMEA10454444 Probiotic
0.96 SAMEA10104927 Prebiotic
0.96 SAMEA9449895 Probiotic
0.96 SAMEA7025248 Probiotic
0.96 SAMEA10104923 Control
0.95 SAMEA9449952 Probiotic
0.95 SAMEA7025245 Probiotic
0.95 SAMEA7025244 Probiotic
0.95 SAMEA10455483 Prebiotic