HoloFood Data Portal
Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Details for MGYG000320870, a genome assembled from HoloFood chicken metagenomes
MGYG000318222
Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.
View MGYG000318222 on MGnifyMGYG000320870’s cluster representative genome MGYG000318222 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318222 from each CAZy category.
MGYG000320870’s cluster representative (MGYG000318222) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318222’s sequence. Because MGYG000320870 has been clustered with MGYG000318222 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320870.
| Containment | Sample accession | Animal accession | Treatment | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| 0.20 | SAMEA10145576 | Control | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
