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Access samples and data collected and generated by the HoloFood project.

SAMEA112905139: a HoloFood chicken host

Data available for SAMEA112905139


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 7 derived samples
API endpoint
/api/animals/SAMEA112905139 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905139, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.32 g
Average Daily Feed intake: Day 00 - 35 93.76 g
Average Daily Feed intake: Day 07 - 21 63.65 g
Average Daily Feed intake: Day 21 - 35 166.63 g
Average Daily Gain: Day 00 - 07 17.34 g
Average Daily Gain: Day 00 - 35 60.97 g
Average Daily Gain: Day 07 - 21 51.04 g
Average Daily Gain: Day 21 - 35 92.72 g
Average European Performance Efficiency Factor: Day 00 - 07 155.56 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.247 None
Average Feed to Conversion Ratio: Day 07 - 21 1.247 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.55 g
Average body weight at day 07 163.9 g
Average body weight at day 21 878.47 g
Average body weight at day 35 2176.6 g
European Performance Efficiency Factor: Day 00 - 35 386.58 None
European Performance Efficiency Factor: Day 07 - 21 409.32 None
European Performance Efficiency Factor: Day 21 - 35 500.77 None
FCR (not corrected): Day 00 - 07 1.114 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.561 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.847 None
Feed to Conversion Ratio: Day 00 - 07 1.114 g/g
Feed to Conversion Ratio: Day 00 - 35 1.538 g/g
Feed to Conversion Ratio: Day 21 - 35 1.797 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=5.88 P1=44.12 P2=32.35 P3=14.71 P4=2.94 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=50.00 P1=29.17 P2=20.83 P3=0.00 P4=0.00 %
Litter at Day 07 5.98 pH
Litter at Day 21 6.76 pH
Litter at Day 35 7.35 pH
Mean Abdominal fat Yield 1.87 %
Mean Abdominal fat weight 43.05 g
Mean Breast Yield 21 %
Mean Breast weight 484.98 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1777.2 g
Mean Carcass Yield 77.13 %
Mean HPT at Day 07 1.7883 ng/ml
Mean HPT at Day 21 0.65112 ng/ml
Mean HPT at Day 35 0.95639 ng/ml
Mean LPS at Day 07 3.6532 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 2.9732 ng/L
Mean Legs Yield 19.41 %
Mean Legs weight 445.92 g
Mean TBARS 0.0467 mg MDA/kg
Mean carcass body weight 2303.7 g
Mean feather cortisol at Day 07 12.413 pg/mg
Mean feather cortisol at Day 21 11.61 pg/mg
Mean feather cortisol at Day 35 11.2 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 2.5 %
Mortality without culleds: Day 21 - 35 2.94 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 2.94 %
Pen code CA09 None

Sample metadata

Marker Measurement Units
Animal code CA09.05 None
Breed Cobb None
C-Reactive protein 0.26 pg/ml
Chicken body weight 225.4 g
Feather cortisol 9.76 pg/mg
Haptoglobin 238.4 ng/ml
Lipopolysaccharide 12.88 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None