MGYG000317887

Taxonomy

Adamsella Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > CAJFVJ01 > Adamsella

Cluster representative

MGYG000315426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315426 on MGnify
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Annotations

MGYG000317887’s cluster representative genome MGYG000315426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315426 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317887 Copy API Endpoint

MGYG000317887’s cluster representative (MGYG000315426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315426’s sequence. Because MGYG000317887 has been clustered with MGYG000315426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317887.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315426

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571794	SAMEA112904960	Prebiotic
1.00	SAMEA10105056	SAMEA112904738	Prebiotic
1.00	SAMEA10104914	SAMEA112904915	Control
1.00	SAMEA7025242	SAMEA112905292	Control
1.00	SAMEA9449878	SAMEA112904817	Control
1.00	SAMEA9449831	SAMEA112904791	Control
1.00	SAMEA10104937	SAMEA112904876	Prebiotic
1.00	SAMEA14099424	SAMEA112905085	Prebiotic
1.00	SAMEA10104933	SAMEA112904856	Control
1.00	SAMEA7697581	SAMEA112905343	Probiotic