HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904915: a HoloFood chicken host

Data available for SAMEA112904915


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
View 6 derived samples
API endpoint
/api/animals/SAMEA112904915 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904915, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.43 g
Average Daily Feed intake: Day 00 - 35 95.83 g
Average Daily Feed intake: Day 07 - 21 66.15 g
Average Daily Feed intake: Day 21 - 35 171.1 g
Average Daily Gain: Day 00 - 07 18.26 g
Average Daily Gain: Day 00 - 35 59.9 g
Average Daily Gain: Day 07 - 21 52.35 g
Average Daily Gain: Day 21 - 35 88.27 g
Average European Performance Efficiency Factor: Day 00 - 07 171.49 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.264 None
Average Feed to Conversion Ratio: Day 07 - 21 1.264 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.39 g
Average body weight at day 07 171.18 g
Average body weight at day 21 904.09 g
Average body weight at day 35 2139.8 g
European Performance Efficiency Factor: Day 00 - 35 355.68 None
European Performance Efficiency Factor: Day 07 - 21 414.3 None
European Performance Efficiency Factor: Day 21 - 35 428.56 None
FCR (not corrected): Day 00 - 07 1.064 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.659 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 2.081 None
Feed to Conversion Ratio: Day 00 - 07 1.064 g/g
Feed to Conversion Ratio: Day 00 - 35 1.6 g/g
Feed to Conversion Ratio: Day 21 - 35 1.938 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=97.50 P1=2.50 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=37.14 P1=40.00 P2=17.14 P3=2.86 P4=2.86 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=36.36 P1=36.36 P2=27.27 P3=0.00 P4=0.00 %
Litter at Day 07 5.79 pH
Litter at Day 21 7.66 pH
Litter at Day 35 7 pH
Mean Abdominal fat Yield 1.85 %
Mean Abdominal fat weight 44.78 g
Mean Breast Yield 21.91 %
Mean Breast weight 527.37 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1896.4 g
Mean Carcass Yield 78.86 %
Mean HPT at Day 07 1.3997 ng/ml
Mean HPT at Day 21 0.87942 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 2.9732 ng/L
Mean LPS at Day 21 2.9732 ng/L
Mean LPS at Day 35 3.1427 ng/L
Mean Legs Yield 19.87 %
Mean Legs weight 477.13 g
Mean TBARS 0.0333 mg MDA/kg
Mean carcass body weight 2403 g
Mean feather cortisol at Day 07 8.9467 pg/mg
Mean feather cortisol at Day 21 8.3233 pg/mg
Mean feather cortisol at Day 35 12.288 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 5 %
Mortality without culleds: Day 21 - 35 5.88 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 5.88 %
Pen code CA04 None

Sample metadata

Marker Measurement Units
Animal code CA04.10 None
Breed Cobb None
C-Reactive protein 0 pg/ml
Chicken body weight 1101.4 g
Feather cortisol 8.55 pg/mg
Haptoglobin 87.39 ng/ml
Lipopolysaccharide 10.79 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None