MGYG000313109

Taxonomy

Gallimonas intestinalis Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas intestinalis

Cluster representative

MGYG000308762

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308762 on MGnify
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Annotations

MGYG000313109’s cluster representative genome MGYG000308762 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308762 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313109 Copy API Endpoint

MGYG000313109’s cluster representative (MGYG000308762) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308762’s sequence. Because MGYG000313109 has been clustered with MGYG000308762 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313109.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308762

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025244	SAMEA112904870	Probiotic
0.99	SAMEA9449856	SAMEA112905272	Prebiotic
0.99	SAMEA9449869	SAMEA112905176	Prebiotic
0.99	SAMEA10145572	SAMEA112905165	Control
0.99	SAMEA9449881	SAMEA112904904	Control
0.98	SAMEA14095990	SAMEA112905014	Prebiotic
0.98	SAMEA9449954	SAMEA112905379	Probiotic
0.98	SAMEA9449907	SAMEA112905341	Prebiotic
0.97	SAMEA7571827	SAMEA112905382	Probiotic
0.97	SAMEA9449902	SAMEA112904829	Control