HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904904: a HoloFood chicken host

Data available for SAMEA112904904


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
View 6 derived samples
API endpoint
/api/animals/SAMEA112904904 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904904, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.67 g
Average Daily Feed intake: Day 00 - 35 93.15 g
Average Daily Feed intake: Day 07 - 21 66.27 g
Average Daily Feed intake: Day 21 - 35 161.99 g
Average Daily Gain: Day 00 - 07 17.46 g
Average Daily Gain: Day 00 - 35 58.55 g
Average Daily Gain: Day 07 - 21 52.37 g
Average Daily Gain: Day 21 - 35 85.27 g
Average European Performance Efficiency Factor: Day 00 - 07 154.95 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.265 None
Average Feed to Conversion Ratio: Day 07 - 21 1.265 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.17 g
Average body weight at day 07 166.38 g
Average body weight at day 21 899.56 g
Average body weight at day 35 2093.4 g
European Performance Efficiency Factor: Day 00 - 35 368 None
European Performance Efficiency Factor: Day 07 - 21 413.84 None
European Performance Efficiency Factor: Day 21 - 35 448.9 None
FCR (not corrected): Day 00 - 07 1.127 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.591 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.9 None
Feed to Conversion Ratio: Day 00 - 07 1.127 g/g
Feed to Conversion Ratio: Day 00 - 35 1.591 g/g
Feed to Conversion Ratio: Day 21 - 35 1.9 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=97.50 P1=2.50 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=50.00 P1=18.75 P2=25.00 P3=6.25 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=26.92 P1=46.15 P2=26.92 P3=0.00 P4=0.00 %
Litter at Day 07 5.86 pH
Litter at Day 21 7.64 pH
Litter at Day 35 7.82 pH
Mean Abdominal fat Yield 1.57 %
Mean Abdominal fat weight 35.82 g
Mean Breast Yield 21.31 %
Mean Breast weight 487.2 g
Mean CRP at Day 07 1.0536 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.2122 pg/mg
Mean Carcass Weight 1790 g
Mean Carcass Yield 78.59 %
Mean HPT at Day 07 1.8764 ng/ml
Mean HPT at Day 21 0.63476 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 3.7893 ng/L
Mean LPS at Day 21 4.0011 ng/L
Mean LPS at Day 35 5.5988 ng/L
Mean Legs Yield 19.69 %
Mean Legs weight 446.62 g
Mean TBARS 0.0433 mg MDA/kg
Mean carcass body weight 2274.5 g
Mean feather cortisol at Day 07 11.527 pg/mg
Mean feather cortisol at Day 21 10.687 pg/mg
Mean feather cortisol at Day 35 13.343 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA18 None

Sample metadata

Marker Measurement Units
Animal code CA18.01 None
Breed Cobb None
C-Reactive protein 0.29 pg/ml
Chicken body weight 155.6 g
Feather cortisol 6.4 pg/mg
Haptoglobin 214.88 ng/ml
Lipopolysaccharide 16.39 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None