HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904829: a HoloFood chicken host

Data available for SAMEA112904829


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has host genomic data Has host genomic data
View 6 derived samples
API endpoint
/api/animals/SAMEA112904829 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904829, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.16 g
Average Daily Feed intake: Day 00 - 35 99 g
Average Daily Feed intake: Day 07 - 21 72.33 g
Average Daily Feed intake: Day 21 - 35 169.44 g
Average Daily Gain: Day 00 - 07 17.73 g
Average Daily Gain: Day 00 - 35 66.67 g
Average Daily Gain: Day 07 - 21 55.94 g
Average Daily Gain: Day 21 - 35 101.88 g
Average European Performance Efficiency Factor: Day 00 - 07 164.1 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.293 None
Average Feed to Conversion Ratio: Day 07 - 21 1.293 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.94 g
Average body weight at day 07 167.05 g
Average body weight at day 21 950.18 g
Average body weight at day 35 2376.4 g
European Performance Efficiency Factor: Day 00 - 35 449 None
European Performance Efficiency Factor: Day 07 - 21 432.59 None
European Performance Efficiency Factor: Day 21 - 35 612.52 None
FCR (not corrected): Day 00 - 07 1.08 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.485 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.663 None
Feed to Conversion Ratio: Day 00 - 07 1.08 g/g
Feed to Conversion Ratio: Day 00 - 35 1.485 g/g
Feed to Conversion Ratio: Day 21 - 35 1.663 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=41.18 P1=23.53 P2=26.47 P3=5.88 P4=2.94 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=46.15 P1=38.46 P2=15.38 P3=0.00 P4=0.00 %
Litter at Day 07 6.24 pH
Litter at Day 21 7.55 pH
Litter at Day 35 7.43 pH
Mean Abdominal fat Yield 1.75 %
Mean Abdominal fat weight 49.93 g
Mean Breast Yield 20.29 %
Mean Breast weight 582.5 g
Mean CRP at Day 07 1.0984 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.1356 pg/mg
Mean Carcass Weight 2236.1 g
Mean Carcass Yield 77.92 %
Mean HPT at Day 07 0.80698 ng/ml
Mean HPT at Day 21 0.71261 ng/ml
Mean HPT at Day 35 0.63926 ng/ml
Mean LPS at Day 07 3.5013 ng/L
Mean LPS at Day 21 3.9897 ng/L
Mean LPS at Day 35 6.8603 ng/L
Mean Legs Yield 20.12 %
Mean Legs weight 577.6 g
Mean TBARS 0.0367 mg MDA/kg
Mean carcass body weight 2869.3 g
Mean feather cortisol at Day 07 13.314 pg/mg
Mean feather cortisol at Day 21 19.052 pg/mg
Mean feather cortisol at Day 35 26 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA22 None

Sample metadata

Marker Measurement Units
Animal code CA22.05 None
Breed Cobb None
C-Reactive protein 0.19 pg/ml
Chicken body weight 272.6 g
Feather cortisol . pg/mg
Haptoglobin 45.29 ng/ml
Lipopolysaccharide 6.76 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None